Salmo salar (Atlantic salmon): 106581644
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Entry
106581644 CDS
T04363
Name
(RefSeq) regulator of nonsense transcripts 3A-like
KO
K14328
regulator of nonsense transcripts 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106581644
03015 mRNA surveillance pathway
106581644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106581644
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106581644
mRNA cycle factors
P-body specific factors
106581644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
106581644
NCBI-ProteinID:
XP_014019274
UniProt:
A0A1S3NV61
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All DBs
Position
ssa21:4653043..4691939
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AA seq
494 aa
AA seq
DB search
MSSEKDQMTGGREKSVVEIQCRDIPRGQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDSKAGSIEEDPEYRRFLDNYSCDEEKSMANPETLLGEI
EAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKRDERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKSDRDDDVDSDRLKDKGDSGDTERAKWDKPSGHMKSK
ETKDQGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGYCQ
DRAKKDGQYHSSYSYCPDTCDKVGKEVREDIGGSRKDRVRNKVSDKACVSQSVLAYQDRR
TSQTEGPHQIGGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMSHLPEHAAADCCYK
AVAMETGSEKSGDE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgaaaaggaccaaatgaccggaggcagggagaaaagtgtcgtcgaaatacaa
tgcagagatattccgaggggacaggacgccgtctccgtcaactcaaagcagaaagaagag
aagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctatgactacttcgagtttttccctgct
gatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaaccccgaa
gacatcctactcttcagagaccgctttgatggctatgttttcattgacaacaaaggccag
gagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaagctcaaa
aagaaagattccaaagctggaagcattgaagaagacccggagtaccggcggtttctggat
aactactcctgtgatgaggagaagtccatggccaaccctgaaaccctgctgggagagata
gaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcacaggataagagaggagaagagagacgagcgtcgacgcagg
gagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggaggagaga
cgcaaacgcaaggaggcggataaacagaagaaactatcggagaaggagatcaagatcaag
ctcctgaagaagagtgaccgggacgatgatgtggactctgacaggctcaaggacaaagga
gacagtggggacacagagagggccaagtgggacaaacccagtggacacatgaagtcaaag
gaaaccaaggaccagggtcagatggagagcgataaggagcagagagagcacggccgcagg
cagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactac
gagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctactgccag
gaccgggcaaagaaagatggccaataccacagctcctactcctactgccccgacacgtgc
gacaaggtgggaaaggaggtcagagaagacattggcggtagcaggaaggaccgcgtccgg
aacaaggtgagcgacaaggcctgtgtttctcagtctgtgttagcctatcaggacagaagg
acgtcccagacagaggggccacaccagataggaggggctctgccaaacaaggaccggcct
gccatgcagctctaccagccaggtgctcacaatcgcaagcgcgtgagctctgcgatgaaa
ggttatgagcttcccatgagccacttgccagaacacgcggcggcagactgctgctacaag
gccgtcgccatggaaacgggctcggaaaagagcggagacgagtag
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