Salmo salar (Atlantic salmon): 106583651
Help
Entry
106583651 CDS
T04363
Name
(RefSeq) helicase with zinc finger domain 2-like
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106583651
Enzymes [BR:
sasa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
106583651
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106583651
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106583651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_30
AAA_19
UvrD_C_2
AAA_22
ResIII
UvrD-helicase
UvrD_C
PhoH
DEAD
SLFN-g3_helicase
AAA_16
AAA
nSTAND3
AAA_24
Bac_DnaA
Urocanase_C
Motif
Other DBs
NCBI-GeneID:
106583651
NCBI-ProteinID:
XP_014023564
UniProt:
A0A1S3P7M3
LinkDB
All DBs
Position
ssa22:48886775..48934635
Genome browser
AA seq
2816 aa
AA seq
DB search
MPAKGTSRSNLTDLLLTYNFKVVCSACSVKENEISYTLKAVDHQCSRELLLAKGKGTNKW
RLVSRRPEFPNPSQYEVCWFFKEGSGCTKHRNRCTFARSHEEATVWNFVKHQRIDHSTLI
RLITELDRSAVLLQNTAETILTEFSGEFQELCKDCFLGTPQTITGKRWNNTCSMDAAHVW
SPVLVHYLAGSQGKEVYNQIRPLPPVCPFQYCNHVMQGMPCWHGPRQCQFAHSEVEMAVW
RAEAPGCRQELLHLSQERQRQKQQSAQDVVPAPNLQVAIYCKACLVTLSSRESFFKHCAS
LEHAQMISGDTTTEWKHRPPPHGRKAEFWLCERPDTCEYGTNCVKAHSEEELEEWVMRAK
EDKEIRRNIEAQGLMSYRDRLLEEYRHSSNEVHIMSEQVDDVTVTFEEEECVETDAEFQW
KFQIKTERLLAHVALLKEERGASFSLDENSSEPCTYSTGELFCKSDMTYDIIVSFKSNNP
GLYQQWLVFDFGMRPVLLQKLKVKVGQQLSPKLEEPPEDVGPPSQNQERWHRGNRVFIPC
LEKTEVQEELLKEYKPPQISLLYKPLDDRNTPMNHQNYKERMHSFLYTEEQAEDQVVSRL
NVRGTVTLSATLDNPLFGMKIAPLGELFCAILVPFTLTPDTPEGLMLRRGIQSALIAPVS
SDNQSHKVYEAIILRDATSECKMHLQLSKRCCSDLKLQKNETCEMEVQFQLNRLKFCEMH
KAIDLLPDTERVLPKFRNCSVPVNKIQFPKLNAKQQAAIDFIIGDSDGRESVAPLLIYGP
FGTGKTFTLATAAKELVRQPHTRVLICTLTNSSADLYVKDHFHSYINSGHPEMKPLRIKA
NKLGVPVSATDEITQKYCLLSENGQFFLPPAKCDLDCHRIVITTTAMARHFQDLKLPDGY
FTHILIDEASQMLECEALMALGLAGPVTRVVLAGDHMQMGPKLFSVDDDQRSNHTLLNRL
FHYYQAQESSAALKSRIIFNENYRSTKEIVEFVSTNFYVGKSDAIKAVGNVPAHPNCHPL
RFHHVRGESHLDTTSMSWFNLEEVTCVVKIVQNLLRDWPPAWGNKDQRSVCVLSEGCQVP
MIRKELRKISLSRVTVENIANVQGKQFRAIVLTAVQTRDSIHPSDSHCVEFFNDARVLNT
AMTRAQSQVVVVGDAAALCYFGMCSRIWRNYIDQCITKGSAEPKHLTQDIIDGDIKEMSR
FQRSEDLDETSTQSVMFGTGNNVDAILQQLQEEQNMAIYNSSDGDKSESKNVDQNRPYDS
TEVERDELLQLLREQPNVYKQGELVMEKYNAGYIIPFDNPTKHIIIKGRGNLGKSFAGDE
VVVKEFPCEGHSQGKVLGTIKAAESSRVFVCTLEDEDYQKRKPKSEYQIPRKIMVPLNKN
TTKICTLVRKKNRNVIPIWKHDDGEWEFVRYQHLDEDIKHNHVFVVEVFDWKTKTESNEI
YPFPLGNVIDIVPIGSSLEEGLKILDAEFKVERSPPRHVLDEVCSWEDTHIGNRKDLRKL
TTFTVDPKHSQDLDDAISVIDKESHYEVGVHIADVASFVKIGDSLDDCAQKRGATIYTPK
EPFYMFPKPFSINHLSLLPGRDRMVISLVVQVDKATDNIIDKNFNLSQINSDRKLSYEEA
EDIISKQSREEAKFDTVEDCVAVAYRFAKVQRKARLGKDWNYNRLDDHQMPGKRRSHQMI
EELSVLFNNSVSEFLINAEETMHCTPLRCQASPDPKMVKDLKAQCKDIISLSSHLRHNLE
YAHDQEVLESKSFPVLTSVWNEILSAAGNGEVDTDRLIDLIATDDIYPQLLPVISKFRKC
LGKAYVIRSNSSPKATVGHYSLHLKSYTQASSPIRRYMDVILQRLLHSILSGTPVQYSPQ
DIDILGQKNEERYKKANEYEKRAEMISFAMDMKKQNALKIAFVVGVEVGDSFKLSFPFDR
HSFPDSLPVMYRDLQLEDQPLYDSNENHMTLTWRRRVYSVDTAKTHQELKRVQNSSACTE
LSQKTWRDIVDAIDQEKWNIARSLILSATTKQTEHFKSVPKHTTLDLLDTGNDSHRTAHG
QDEKIEMEHYVDLTLQLKPGDTLQVQITSEKKRGYWTPTLQLVCIKPTFEVCVDHAHSPI
TCFSKCADRPSKSEYSNAEEYVRIWKPLCEMESAANAVDESDIIIIEDLELNLKQGSKLE
GSFDLPLEYIKEWAIECNLNKCLLCIRKRGLKLASTPDQSDEVVDPKNYTWVAHGVTTKF
DEPKKKAPNQARKVHFYIHHLPMDTIPDCVSQRKTRYTVEIIPKLLPDVRKEMAVNNVVS
ANELVQKIALGQPIPKGASQSVVPRHRLMREKAPEGLPELNKSQYDAVEKALNNKFTLIQ
GPPGTGKTVVGVYIVYWYRVLNSHNPRIFEDPKDKDKKEVILYCGPSNKSVDVVAEYLLR
FGDKLKPLRLYSRQMEMLEYPYPGSILQLSPRSLRQERSKPKLRAITLHHRIREEQNPHS
GEIIEFDHRINLARESNGQQLTDEEVEDYKKLLNKARVYELQRHDVILCTCTAASNPSLI
KTVNPRQILIDECAMATEPQALIPLVSNKPEKIVLLGDHKQLRPIIKNELVRKLGMSKSL
FERYFERRSQTVMLDTQYRMHEDICKFPSEEYYEGKLKTDVDRPNSVLQADSRQTHIVFG
NVSGEEVSLVVSTEKGNENSKANMKERDVVVRIANQLVTESKIKQQSMAILSPYNAQVAE
IKKELRKLKLDEITVTTITKSQGSEWRYVILSTVRSLPSKEIETEPDRAWLSKHVGFVRD
PNQINVGITRAKEGLCIIGNQELLSRSGAWRQLLKHYTARNFVTEAEKISVRKVAK
NT seq
8451 nt
NT seq
+upstream
nt +downstream
nt
atgccagccaaagggacaagtaggtccaacctgactgatctcttgttgacatataacttt
aaagttgtgtgttctgcatgctctgtaaaagagaacgaaatctcgtacacccttaaagca
gtcgaccaccaatgcagcagagaacttctattggctaaaggcaaaggtactaacaaatgg
aggcttgtttcccgccgccctgaatttccaaacccaagccagtatgaagtttgttggttc
ttcaaggagggctctgggtgtacgaagcacaggaaccgctgcaccttcgcaaggagccac
gaggaggccacagtgtggaactttgtaaagcaccagaggatagatcacagcacgttaatt
agactgataaccgagttggatagaagtgccgtcctactgcaaaacactgccgaaaccatc
ctcactgagttctcaggggaatttcaagagctttgtaaagactgcttcctcggcactcca
caaacaattacaggtaaacggtggaacaacacttgctcaatggatgcagcccatgtctgg
agcccagtcttggttcattacctggcaggaagtcaggggaaggaagtctacaatcagata
aggcctctgcccccagtctgccctttccagtactgcaaccatgtcatgcaaggtatgccc
tgttggcacgggcccagacagtgccagtttgcccacagcgaggtggagatggctgtctgg
cgagcagaggcaccagggtgtcgccaggaactcctgcatctctcccaggagaggcaacgt
cagaagcaacagtcggctcaagacgtagtgcccgcccctaacctgcaggtggcgatctac
tgcaaggcttgcctcgtaaccctctcctctcgggagagctttttcaaacactgtgcctca
ttggagcatgcccagatgatctccggggacacgaccacagagtggaaacatcgtcccccg
ccccacggccgcaaagcagagttttggctgtgcgagaggcctgacacctgtgaatatggc
accaactgtgtgaaagctcactctgaggaggagcttgaagagtgggtaatgcgagccaaa
gaggacaaggagataaggcgcaacatagaggctcaaggcctcatgtcttacagggatcgt
cttttggaggagtacagacacagcagcaatgaagtgcacattatgtcagagcaagttgat
gacgtgactgtcacttttgaagaggaggagtgtgtggagactgatgcagaattccaatgg
aagttccagatcaaaacagagagactacttgcacatgtagcattactgaaagaggaacgt
ggagcctctttctccctggatgaaaacagttctgagccctgcacttactccacgggtgaa
ctgttctgtaaatcagacatgacctatgacatcatcgtgtccttcaagtccaacaacccg
ggtctttaccaacagtggttggtgtttgactttggcatgaggccagtgctcctgcagaaa
ctgaaggttaaagtcggacagcagctatcccctaagctcgaggagccacctgaggacgtt
gggcccccttcccagaatcaggaacgctggcatcgggggaacagggtcttcatcccctgc
ttggaaaagacagaagtacaggaagagcttctgaaggagtacaagcctcctcagattagt
ttgctgtataaaccacttgacgaccgcaacacgcccatgaatcaccagaattacaaagag
aggatgcacagcttcctgtacacagaggagcaggcagaagatcaggtggtttcaagactc
aatgttcgagggaccgtcaccttgtcggccaccctagacaaccctctgtttgggatgaag
atagctcctctgggggaactattctgtgccatcttagtcccttttactctcaccccagac
acaccagagggtttgatgctgagacgaggcatccagtcagctctcatagcaccagtatca
tcagataatcaaagtcacaaggtctacgaagccatcattctcagagacgccaccagtgag
tgtaaaatgcacttgcagctgtctaaaagatgctgctctgacctgaagctccaaaaaaat
gaaacatgtgaaatggaagtccagttccagctgaatcgtctgaagttctgtgagatgcac
aaagccatagatctccttcctgacacagagagagtgttaccaaaattcaggaactgcagt
gtccctgttaacaaaatacaattccccaaactcaatgcaaagcagcaggcagccattgat
ttcatcataggggactccgatggaagagaaagtgtggcccccctcctcatttatggaccg
tttggaactgggaaaaccttcacgctcgcaacagcagccaaagagctggtacgccaacct
cacaccagagtactgatttgcactcttacaaacagctctgcagatttgtatgtcaaagac
cacttccactcatacattaactctggacaccctgagatgaagccactgaggataaaagca
aataaactaggggttccagtgagtgccacggatgagatcacacagaagtactgccttcta
tcagaaaacggacagtttttcctacctcctgccaaatgcgatttagattgccatcgaata
gtcatcacaactactgcaatggcaaggcacttccaggacctgaagctccctgatggctac
ttcacccacatcctgattgacgaagcgtcccagatgcttgaatgtgaagctctgatggcc
cttggtctggctgggccagtaactcgagtggttctagctggagatcacatgcagatggga
ccaaagctcttttcagtggacgatgaccaacgctccaatcataccttgctgaaccgtctg
ttccactactatcaagcccaggagagtagtgcagctttgaaaagcagaatcattttcaac
gagaactatcgctccaccaaagagatagtagaatttgtgtccactaacttctacgttggc
aagtctgatgccatcaaggctgtaggtaatgttccagctcacccgaactgccaccccctg
aggttccaccatgtcagaggagaatctcacttggacaccacatccatgtcgtggtttaat
cttgaagaggttacatgcgtggttaaaatagtgcaaaatctactcagagattggccaccc
gcatgggggaataaggatcaacgctcagtctgtgttctttctgaaggatgccaggttcca
atgatcaggaaagagcttcggaaaatatccctgagccgagtgactgtggaaaatattgcc
aatgttcaaggcaaacagttcagagcaatagtattgacagccgttcaaacccgtgacagc
attcacccttctgactcacattgtgtggagtttttcaacgatgctcgcgtgctgaacacg
gccatgactagggctcaatcccaggttgttgtggttggagatgctgccgctctgtgctac
tttggaatgtgctcaagaatctggaggaactacattgaccagtgtataacaaagggaagt
gctgaaccgaaacaccttacacaagacataattgatggcgatatcaaggaaatgtcaaga
ttccaacggtcagaagacctggatgagaccagcactcagtcagttatgttcggcacaggg
aacaacgtggatgcgattctccaacagctgcaagaggaacaaaacatggcaatctacaat
tcatctgatggagacaaatcggaatcgaaaaatgtagaccaaaatagaccatacgatagt
accgaagttgaaagagatgagttgttgcagttgttgagagagcagccaaatgtgtacaag
caaggtgaattggtcatggagaaatataacgcaggttatatcataccatttgacaaccca
accaagcacattatcatcaaaggtagaggtaacctcggcaagtccttcgctggtgacgaa
gtggtcgtaaaagaatttccttgtgagggccattcacagggaaaggtgttaggcaccatc
aaggcagctgaatcctctcgtgtgtttgtttgtaccctcgaagatgaagattaccagaaa
cgcaaaccgaagtctgaatatcaaattcccagaaagataatggtacccctcaataagaac
actaccaaaatttgcaccttggtcagaaagaagaatcgcaatgttattccaatatggaag
catgatgatggagaatgggagtttgtcagatatcaacaccttgatgaagacatcaaacac
aatcatgtgtttgtggtggaggtctttgactggaaaacgaaaactgaaagcaatgaaatc
tatccctttccgttagggaacgtaatagatattgttcccataggatcatctttggaagag
ggcttaaagattttggacgcagaatttaaagtcgaacgatcgcctcccagacatgtttta
gatgaagtgtgttcctgggaagacacccacattggtaacagaaaggacctccgaaagttg
actactttcactgttgacccaaaacattcccaagacttggatgatgcaattagtgtcatt
gacaaggaaagccattatgaggttggagtccacatagcagatgtggcaagtttcgtgaag
attggtgattcgttggatgattgtgcacaaaaacggggtgcaacaatatacactcctaaa
gaaccattttacatgttcccaaaaccatttagcatcaaccacttgagtctcctgcctggt
cgagatcgtatggtgatttcattagtggtacaagtagacaaggcaacagacaatatcatt
gacaagaacttcaatctttctcagatcaattctgatagaaagttgtcttatgaagaggcg
gaggacatcatcagtaagcagtcaagagaagaggccaagtttgatactgtagaagactgt
gttgctgtggcatatcgttttgccaaagtccaaaggaaggccaggcttggcaaggattgg
aactataatcgactggatgatcaccagatgccggggaagaggagatcccatcagatgatt
gaggagcttagtgtactgttcaacaattctgtgtctgaatttttgatcaacgcagaagaa
accatgcactgcactcctctccgatgtcaagcaagtcctgaccctaaaatggtcaaagac
ttgaaagcgcagtgcaaagacatcatatcactgtcctcacacctaaggcacaaccttgaa
tacgcccatgaccaggaggtcttggagagcaaaagcttccccgtgctaacatcagtgtgg
aatgagatcctatcagctgctgggaacggggaagttgacactgacagattgattgatctg
atagctacagatgacatctatccccagctccttccagtgatatctaagtttaggaagtgt
cttggcaaagcgtatgtcatccgttccaattcatcccctaaggcaactgttgggcactat
tccttgcatctgaagtcctatacacaagcatcctcgcccatacgtcgctacatggatgtt
atcctgcaaaggcttttgcattcaatcctaagcggcactccagtccaatattctccacaa
gacattgacattctgggtcagaagaatgaagaaagatacaagaaagccaatgagtatgaa
aagagggctgagatgatttcctttgccatggacatgaagaaacaaaatgctttgaagata
gcatttgttgttggtgttgaggtaggagacagtttcaagctgtcatttccatttgacagg
cactcatttccagacagtttgcctgttatgtacagagatttgcaactggaggatcaacca
ctgtacgactcaaacgagaatcacatgactctaacatggagaagacgagtgtactcagtt
gacactgccaaaactcaccaagagctaaaaagggtgcaaaattcttctgcatgcactgag
ctttcacaaaagacttggcgagacattgttgatgcaattgaccaggaaaaatggaacata
gcaaggtctctcatactaagcgccacaacaaaacaaacggaacattttaagagtgtgcca
aaacataccacactggatttgcttgacacagggaatgactctcatagaactgcacatgga
caagatgaaaaaattgaaatggagcactatgttgatcttactctccagttgaagccagga
gacacacttcaagtccaaattacatctgaaaaaaagcgaggttattggacacccactctt
cagttggtgtgcatcaaaccaacgtttgaggtgtgtgtagaccacgcccacagccctatc
acatgcttctccaaatgtgcagaccgtccatccaagagtgaatatagcaacgctgaagag
tatgtgaggatctggaaaccactttgtgagatggagtctgcagccaatgctgtggatgaa
agtgacatcataatcattgaggacctggagctgaacttgaagcaagggagcaaactagaa
ggaagttttgaccttcctctcgaatacattaaagaatgggccatcgaatgcaaccttaac
aagtgcttactgtgtatccgaaaaagagggttgaaactggcctcaacccctgaccaatca
gatgaagtagttgaccctaaaaactacacatgggtggcccatggtgttacaaccaagttc
gacgaaccaaagaagaaggctccaaatcaagccagaaaagtgcatttctacatccaccat
ttgccaatggataccattccagattgtgtctcccagagaaagacaagatatacagttgag
ataatcccgaagcttctaccagacgtacgtaaagaaatggctgtgaacaacgttgtgtct
gcaaatgagcttgtgcagaaaatagccctaggacaacctattccgaaaggagcttcgcaa
tctgttgtaccacgacaccgactcatgagagaaaaggcaccagaaggtctcccagagctg
aataagagtcaatatgatgcagtggagaaagctctgaataacaaattcacactcatacaa
ggaccacctgggactggaaagaccgttgtaggagtgtacattgtgtactggtaccgtgtg
ctaaactcccacaaccccagaatatttgaagatcccaaggacaaggacaagaaagaagtt
attctctactgtggtccttccaacaagtctgtcgatgtggttgctgagtacctgttgagg
tttggagacaagctgaagcccctcaggttgtacagccgacaaatggagatgctggagtac
ccatacccaggcagtatccttcagctgtctcccaggtcacttcgccaagagcggtccaag
ccaaaactcagagctattaccttgcatcatcgcatacgggaagaacaaaatccgcattcc
ggggaaataatagagtttgaccacagaataaacctagccagagaatcaaacggacagcag
ctgacagacgaagaagttgaggactacaaaaagcttctgaataaagctcgtgtgtatgag
ctgcagagacacgatgtcattctgtgcacctgcacagcagcctccaaccctagcctgatt
aaaacagtcaatccacgccagatccttattgatgaatgtgctatggcaacggaacctcag
gccctcatcccactggtcagcaacaaaccagaaaagattgtgttgctcggtgaccacaaa
caactacgtcccatcatcaagaatgaacttgtgaggaagttggggatgtcaaagtctctg
tttgagcgctactttgaacgccggtcccagacagtgatgctggatacccagtacagaatg
catgaagatatatgcaagttcccatcagaggagtattatgaaggaaaactgaagactgac
gtggatcgcccaaatagtgtccttcaggctgacagcaggcagacgcacattgttttcggc
aacgtcagtggagaagaggtcagcctggttgtgagcacagaaaaaggaaatgaaaactcc
aaagcgaatatgaaggagagagacgtagtggttcggatcgccaaccagctggtgacagaa
tccaaaataaaacaacagagtatggcgatcctatctccctacaatgcccaggtggccgaa
attaagaaagaactgagaaaattaaaactggacgaaatcacggtcaccaccatcacaaaa
agtcaaggaagtgaatggcgctatgtcatcctgtccactgtgcgctccttacccagcaag
gagatcgagacagagccggacagggcctggttgtccaaacatgtgggctttgttcgtgac
cccaaccagataaacgtgggcattaccagggccaaagagggactgtgcattatcggtaac
caggagttgttgagccgcagtggtgcttggagacaactcctcaaacattatacggcaagg
aactttgtcacagaagctgaaaagatctctgtgcgcaaagtagcaaaatag
DBGET
integrated database retrieval system
