Salmo salar (Atlantic salmon): 106599024
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Entry
106599024 CDS
T04363
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106599024
03015 mRNA surveillance pathway
106599024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106599024
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106599024
5.6.2.5 RNA 5'-3' helicase
106599024
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106599024
mRNA cycle factors
Common to processing body (P body) and stress granule
106599024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
106599024
NCBI-ProteinID:
XP_014045545
UniProt:
A0A1S3QZL1
LinkDB
All DBs
Position
ssa03:13699117..13708845
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AA seq
1104 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVLQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPVLQGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMN
IPFNLVMPPMPPPGYLGQVHCPPAGRGGGMKGKAGAGGARGGRQRSRGMGNHGGGSGQHG
LMSGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDV
ALSQDSTYQGERAYQHGVTGLSQY
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagttgcttggagcagatacccagggttcggagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagttctgcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatcctgcttgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcagctccgggcccgccagataaccgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactatgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccattgagctgaggagcagtgctggggct
cccgtggaagtaccacacaacttccaggttgactttgtgtggaagtccacctcctttgac
cggatgcagagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccagggaccccctggcacggggaaaactgtcacc
tctgccactgtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctcggatgagaaacgctacagggccctgaagcgcacc
gccgagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gatccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtagga
gaccactgtcagctgggtccagtagtgatgtgtaagaaggcagccaaggcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccgcaa
ccagacaagcccatgttcttctacgtgaccctgggccaggaagaaattgcaagctctgga
acctcctatcttaacaggactgaggcttccaatgtggagaagatcaccacgaggctgcta
aaggctggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagaaaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccatcaaccctgttcttcaggggggccgtttcatgagcacagccatgtatgatgcaagg
gaggctcttattcctggatctgtgtatgaccgcagcagcactgggcgttcatccaacatg
tacttccagacccacgaccagatcggcatgattggcccgggccccatggcctccatgaac
atccccttcaacctggttatgccccccatgccgccgccaggctacctgggccaggtccac
tgccccccagcaggccgtggtggaggtatgaagggtaaggcgggtgctggaggggcgcga
ggtgggcgccagaggagccgtggcatggggaaccacggcgggggcagcgggcagcacggc
ctcatgagtggcagccaggccagccaggatctgggctcccagcccttctcccagggaccc
ctcacccagggctacatcaccatgagccagccctcccagatgagccagcctggcctctcc
cagcctgaactctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtg
gccctctcccaagactccacctaccaaggggaaagagcctatcaacatggtgtgactgga
ctgtcccagtactag
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integrated database retrieval system
