Salmo salar (Atlantic salmon): 106609898
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Entry
106609898 CDS
T04363
Symbol
kdm2a
Name
(RefSeq) lysine demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106609898 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106609898 (kdm2a)
04121 Ubiquitin system [BR:
sasa04121
]
106609898 (kdm2a)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106609898 (kdm2a)
Enzymes [BR:
sasa01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
106609898 (kdm2a)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
106609898 (kdm2a)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106609898 (kdm2a)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
106609898 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
106609898 (kdm2a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
LRR_FBXL15
Cupin_8
Motif
Other DBs
NCBI-GeneID:
106609898
NCBI-ProteinID:
XP_014064418
UniProt:
A0A1S3SJA6
LinkDB
All DBs
Position
ssa08:complement(764136..784451)
Genome browser
AA seq
1312 aa
AA seq
DB search
MGGFAVATQDRSSFPENVSQQCKAPGVKTQQKQGSRLRRLGRSTVLEQFYSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPTSVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSTCESVNGHTQKE
DEEEAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRA
LLKEHANDIPKLSYTGKPIVKWPTRPSWYQPPPPPPPVARPKLSATVVTPRPQKPASSMS
VLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEL
CGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGEGVVNTDLPSCWECPKCVLGITD
TEVKGDKNKMLHAKRKSTSYLDGRVAKIYRRRGHSRDDDDDSGSEDDDDDDEDDDDDEGS
RGGGAGRKMSGPRPRGSGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRRGRG
GLGVGRGDREGGRRERGGRVRLRGGTRMQRRRDESEEDDNDDDDDDDDEDDDSEEDPQHH
HRHKDHRQRRRRRRTDEEDDDEDDDEEDSSARDLEGEDEDVDDEDEDEEDDENQSDSEPE
PPVLLVSDLNDDLLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYAQHKT
LGKTRHKNGMVAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERDTASPSSSDSSASPT
PPPHTSHSPSSLLSLPSFKDVGNEKGGEKEVWVAVFLYLSRAELASCMTVCKAWYKWSCD
KRLWSGVDVSRCPSLSSQALQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAG
CSWSSMSALSTPSLPCLRTLDLRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLD
ISDSTLRLILRHMPLLERLDLAHCRDLTDQSVCLLTAAGTHTRNTLTEINLSGCNKLTDG
CLAYLKRASGLALLDLRGCKGVTRQGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgggcggctttgctgtagcaacccaagacagaagtagcttcccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagcaaggaagcagactacgcagactg
ggccggtcgaccgtccttgaacagttctactcaatcatggtgcggtcgggcacgaggagg
cgctaccatgacgatggtatctcggatgacgagatcgaggggaagaggacctttgacctg
gaggagaagttgaggagcgagaggttcacctcagacagggtgaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtggattgagggacccgatcatctttgagaag
ccagacggactgggcatcaagatgccagatccagacttcagtgtgaatgacgtcaagata
tttgttggcagcaggcgtatgatcgacgtgatggatgtgagcactcagaagggtatagag
atgtctatggcccagtggagacgttactacgagacgcccccctcccagagggacaaactc
tacaacgtcatcagcctggagtttagtcacaccaaactggagaacctggtccagaggcct
acatcagtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagcga
cagagagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgtgcagggctgctacacggacttccacatcgacttcggaggttcctcggtc
tggtaccacatactgcggggtggcaaggtgttctggctaatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctataccttcatgatcccttca
ggttggatccatgcggtctacactccagtggacaccctggtgtttgggggaaacttcctc
cacagcttcaacatccccatgcaactcaacatctacagcatcgaggacaggacacgggta
ccagctaagttccgttacccgttctactatgagatgtgttggtacgtattggagagatac
ctcttcagtctgaccaacacctcctacctcacgcctgatttccagaaacactccctgggc
atcggtcttacgagagacccctccacctgtgagtcagtcaacggccacacccagaaggag
gatgaagaggaggctcccccgacgcggggctctaagcccggggtgaaagttcacctgacg
ccctttgagctggaggggctgtggaacctgctggggaagctggagtcactgccctcacag
aagaactgtgtcccggcgggcatacacaatgctcccgcgctgctgcacgacatcagggcc
ctgctgaaggagcatgctaatgacatccccaaactgtcctacactggaaagcccatcgtc
aagtggcccactaggccgtcgtggtaccagcctcctccccctcctcccccggtggctcgt
cccaagctgtctgccacggtggtgaccccgcggccccagaagcccgcctcctccatgtcc
gtgctgcggcggcggcgcgtgcggtgtaagcgctgtgaggcgtgcgtcaggacggagtgc
ggggactgtaacttctgcagggacatgaagaagttcggcgggccggggaaactgaaacag
acctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagctc
tgtggagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggag
tgttccaactgtgcccagatcgcccatcccgcctgcctcaaggtgacaggggagggagtg
gtgaacacagatctgcccagctgctgggagtgtcccaaatgtgttttgggaatcaccgac
actgaggtgaaaggggacaagaataaaatgttacacgcgaaacgcaagtctacttcgtat
ctcgacggccgcgtcgccaagatctaccgtcgccgtggtcacagtcgagacgacgacgat
gactcgggcagcgaggacgacgacgacgatgatgaggatgatgatgatgatgaaggctcc
aggggcggaggcgcgggaaggaagatgtccggaccacgccctcgcggcagtggctccgcc
tctcgaagaggctacgggactgggaggcgaggcatttggagaggctcctcccacagaggg
gcaggccgtgggagcgggctggcccctcactcctccctgaagatgaggcgtggcagaggg
gggctgggggtggggcgaggggacagagagggggggcgcagggagagaggcgggagagtg
cgcctccggggaggcaccaggatgcagagacgcagggacgagtcggaggaggacgacaac
gatgatgatgatgacgacgacgatgaagatgacgacagcgaggaagatccgcagcatcac
caccggcataaagaccaccggcaacgccgcaggcggaggagaacggacgaggaagacgac
gatgaagatgacgatgaggaagacagctcggcccgggacctggagggggaggacgaggac
gtggacgatgaagacgaggatgaggaagacgacgagaaccagtcagactctgaacctgag
cctcccgttctcctggtgtctgaccttaacgacgacctcctaaacggttcgtacctgacc
gtgaccctacagcgcccccccagggccaaacgccaccccggctccattgtgcccaagctg
gaggccgccatgtctcccagaacccacggcggcggtccaggttacgcccagcataaaacc
ctcgggaagacgcggcacaaaaacggcatggtcgccgccggcaatggcctggcccagccc
gccaagaatccagtcggccggccgcctcgtcaccgtatcaacaatccccacggcgacaca
gcagacagggagagggacactgcctctccttcctcctcagactcctcggcctcccccacc
cctcctccccacacctcccactctccttcctcgctcttgtcgctgccctccttcaaggat
gtaggaaacgagaaaggaggggagaaggaagtgtgggtggctgtgttcctttacctgagt
agagctgagctggctagctgtatgactgtctgtaaggcctggtacaaatggagttgtgac
aagcgtctgtggagcggtgtggatgtatcgcgttgtccctctctctcctcccaggccctg
cagggcatcatcaaacgccagcccacctccctggacctctcctggacccccgtgtccaag
aaacagatcaccctgctcatacaccgcctgccaggtctgaaggagctgatgatagcaggt
tgctcctggtcgtccatgtcggccctgtccacccccagcctgccgtgcctccgtaccctg
gacctgcgctgggcagagggggtcaaagacacccagatcagggacctggtcacaccacca
ggttgtgacagtcggtctcggctgcgtggctgtgtggtgctgcgtctagccggcctggac
atcagtgactccaccctgaggctgatcctccgtcacatgcccctgctagagaggctggac
ctggcccactgcagagacctcaccgaccagtccgtctgcctgctcaccgccgccggcaca
cacacacgtaacacactcacggagatcaacctctcaggctgtaacaagctgacggacggc
tgtctggcctacctgaagagggcgtctggcctggcgctgctggacctgcggggctgcaaa
ggtgtgacgcggcagggctgtgagggcttcatctcggacctctctcactgcgtcctgttc
tgtatgacagaggagaaactcatccagaggatatcgtaa
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