Salmo salar (Atlantic salmon): 106609898
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Entry
106609898 CDS
T04363
Symbol
kdm2a
Name
(RefSeq) lysine demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106609898 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106609898 (kdm2a)
04121 Ubiquitin system [BR:
sasa04121
]
106609898 (kdm2a)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106609898 (kdm2a)
Enzymes [BR:
sasa01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
106609898 (kdm2a)
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
106609898 (kdm2a)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
106609898 (kdm2a)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
106609898 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
106609898 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
106609898
NCBI-ProteinID:
XP_014064418
UniProt:
A0A1S3SJA6
LinkDB
All DBs
Position
ssa08:complement(764136..784451)
Genome browser
AA seq
1312 aa
AA seq
DB search
MGGFAVATQDRSSFPENVSQQCKAPGVKTQQKQGSRLRRLGRSTVLEQFYSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPTSVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSTCESVNGHTQKE
DEEEAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRA
LLKEHANDIPKLSYTGKPIVKWPTRPSWYQPPPPPPPVARPKLSATVVTPRPQKPASSMS
VLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEL
CGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGEGVVNTDLPSCWECPKCVLGITD
TEVKGDKNKMLHAKRKSTSYLDGRVAKIYRRRGHSRDDDDDSGSEDDDDDDEDDDDDEGS
RGGGAGRKMSGPRPRGSGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRRGRG
GLGVGRGDREGGRRERGGRVRLRGGTRMQRRRDESEEDDNDDDDDDDDEDDDSEEDPQHH
HRHKDHRQRRRRRRTDEEDDDEDDDEEDSSARDLEGEDEDVDDEDEDEEDDENQSDSEPE
PPVLLVSDLNDDLLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYAQHKT
LGKTRHKNGMVAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERDTASPSSSDSSASPT
PPPHTSHSPSSLLSLPSFKDVGNEKGGEKEVWVAVFLYLSRAELASCMTVCKAWYKWSCD
KRLWSGVDVSRCPSLSSQALQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAG
CSWSSMSALSTPSLPCLRTLDLRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLD
ISDSTLRLILRHMPLLERLDLAHCRDLTDQSVCLLTAAGTHTRNTLTEINLSGCNKLTDG
CLAYLKRASGLALLDLRGCKGVTRQGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgggcggctttgctgtagcaacccaagacagaagtagcttcccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagcaaggaagcagactacgcagactg
ggccggtcgaccgtccttgaacagttctactcaatcatggtgcggtcgggcacgaggagg
cgctaccatgacgatggtatctcggatgacgagatcgaggggaagaggacctttgacctg
gaggagaagttgaggagcgagaggttcacctcagacagggtgaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtggattgagggacccgatcatctttgagaag
ccagacggactgggcatcaagatgccagatccagacttcagtgtgaatgacgtcaagata
tttgttggcagcaggcgtatgatcgacgtgatggatgtgagcactcagaagggtatagag
atgtctatggcccagtggagacgttactacgagacgcccccctcccagagggacaaactc
tacaacgtcatcagcctggagtttagtcacaccaaactggagaacctggtccagaggcct
acatcagtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagcga
cagagagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgtgcagggctgctacacggacttccacatcgacttcggaggttcctcggtc
tggtaccacatactgcggggtggcaaggtgttctggctaatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctataccttcatgatcccttca
ggttggatccatgcggtctacactccagtggacaccctggtgtttgggggaaacttcctc
cacagcttcaacatccccatgcaactcaacatctacagcatcgaggacaggacacgggta
ccagctaagttccgttacccgttctactatgagatgtgttggtacgtattggagagatac
ctcttcagtctgaccaacacctcctacctcacgcctgatttccagaaacactccctgggc
atcggtcttacgagagacccctccacctgtgagtcagtcaacggccacacccagaaggag
gatgaagaggaggctcccccgacgcggggctctaagcccggggtgaaagttcacctgacg
ccctttgagctggaggggctgtggaacctgctggggaagctggagtcactgccctcacag
aagaactgtgtcccggcgggcatacacaatgctcccgcgctgctgcacgacatcagggcc
ctgctgaaggagcatgctaatgacatccccaaactgtcctacactggaaagcccatcgtc
aagtggcccactaggccgtcgtggtaccagcctcctccccctcctcccccggtggctcgt
cccaagctgtctgccacggtggtgaccccgcggccccagaagcccgcctcctccatgtcc
gtgctgcggcggcggcgcgtgcggtgtaagcgctgtgaggcgtgcgtcaggacggagtgc
ggggactgtaacttctgcagggacatgaagaagttcggcgggccggggaaactgaaacag
acctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagctc
tgtggagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggag
tgttccaactgtgcccagatcgcccatcccgcctgcctcaaggtgacaggggagggagtg
gtgaacacagatctgcccagctgctgggagtgtcccaaatgtgttttgggaatcaccgac
actgaggtgaaaggggacaagaataaaatgttacacgcgaaacgcaagtctacttcgtat
ctcgacggccgcgtcgccaagatctaccgtcgccgtggtcacagtcgagacgacgacgat
gactcgggcagcgaggacgacgacgacgatgatgaggatgatgatgatgatgaaggctcc
aggggcggaggcgcgggaaggaagatgtccggaccacgccctcgcggcagtggctccgcc
tctcgaagaggctacgggactgggaggcgaggcatttggagaggctcctcccacagaggg
gcaggccgtgggagcgggctggcccctcactcctccctgaagatgaggcgtggcagaggg
gggctgggggtggggcgaggggacagagagggggggcgcagggagagaggcgggagagtg
cgcctccggggaggcaccaggatgcagagacgcagggacgagtcggaggaggacgacaac
gatgatgatgatgacgacgacgatgaagatgacgacagcgaggaagatccgcagcatcac
caccggcataaagaccaccggcaacgccgcaggcggaggagaacggacgaggaagacgac
gatgaagatgacgatgaggaagacagctcggcccgggacctggagggggaggacgaggac
gtggacgatgaagacgaggatgaggaagacgacgagaaccagtcagactctgaacctgag
cctcccgttctcctggtgtctgaccttaacgacgacctcctaaacggttcgtacctgacc
gtgaccctacagcgcccccccagggccaaacgccaccccggctccattgtgcccaagctg
gaggccgccatgtctcccagaacccacggcggcggtccaggttacgcccagcataaaacc
ctcgggaagacgcggcacaaaaacggcatggtcgccgccggcaatggcctggcccagccc
gccaagaatccagtcggccggccgcctcgtcaccgtatcaacaatccccacggcgacaca
gcagacagggagagggacactgcctctccttcctcctcagactcctcggcctcccccacc
cctcctccccacacctcccactctccttcctcgctcttgtcgctgccctccttcaaggat
gtaggaaacgagaaaggaggggagaaggaagtgtgggtggctgtgttcctttacctgagt
agagctgagctggctagctgtatgactgtctgtaaggcctggtacaaatggagttgtgac
aagcgtctgtggagcggtgtggatgtatcgcgttgtccctctctctcctcccaggccctg
cagggcatcatcaaacgccagcccacctccctggacctctcctggacccccgtgtccaag
aaacagatcaccctgctcatacaccgcctgccaggtctgaaggagctgatgatagcaggt
tgctcctggtcgtccatgtcggccctgtccacccccagcctgccgtgcctccgtaccctg
gacctgcgctgggcagagggggtcaaagacacccagatcagggacctggtcacaccacca
ggttgtgacagtcggtctcggctgcgtggctgtgtggtgctgcgtctagccggcctggac
atcagtgactccaccctgaggctgatcctccgtcacatgcccctgctagagaggctggac
ctggcccactgcagagacctcaccgaccagtccgtctgcctgctcaccgccgccggcaca
cacacacgtaacacactcacggagatcaacctctcaggctgtaacaagctgacggacggc
tgtctggcctacctgaagagggcgtctggcctggcgctgctggacctgcggggctgcaaa
ggtgtgacgcggcagggctgtgagggcttcatctcggacctctctcactgcgtcctgttc
tgtatgacagaggagaaactcatccagaggatatcgtaa
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