Streptomyces calvus: CD934_19790
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Entry
CD934_19790 CDS
T06819
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sast
Streptomyces calvus
Pathway
sast03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CD934_19790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sast03400
]
CD934_19790 (mfd)
Enzymes [BR:
sast01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CD934_19790 (mfd)
DNA repair and recombination proteins [BR:
sast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CD934_19790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDI70678
UniProt:
A0A514JVR2
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All DBs
Position
4592906..4596514
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AA seq
1202 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAITAAADGNRMHVDLVGPPAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNEVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRERARVLAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAMSRADEARSGEGGGGRRAGGQAPIDVGAAS
LWSIADVRDRARELDMMWWSVSPFAADEELTGTYAADAAGDTLKLGMHAPESYRGDTARA
LADTKGWLADGWRTVYVTEGHGPAARTVEVLGGEGIAARLDTDLGEISPSVVHVACGCID
LGFVDPALRLAVLTETDLTGQKASGREGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRY
IEMVQRTVQGATREYLVVEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGAD
WTKTKARAKKAVKEIAADLIKLYSARMAAPGHAFAADSPWQRELEDAFPYAETPDQLTTI
AEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTF
SERYAQFPVNVRALSRFQTDTEAKAVLEGLRDGSVDVVIGTHRLFSSETKFKDLGLVIVD
EEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTF
VGPYEQKQIGAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESA
LEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRER
GYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAG
VGFDLYVRMVGEAVADYRRQLETGGIEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYR
AIASANTEDDIKAVREELVDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGTNVRFA
PVELRESQELRLKRLYPGTVVKPAAHQVLVPRPKTAEVGGKPLVGRELLGWVGEFLTSVL
GS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgccctcgcggaagcgatc
accgcggccgccgacggcaaccgcatgcacgtcgacctggtcggcccgcccgcggcccgc
cccttcgcggtcgccgccctggcccgggacagcggccgccccgtgctcgcggtgacggcg
accggccgcgaggccgaggacctggccgccgccctgcgctccctgctcccgccggaaggg
gtcgtggagtacccgtcctgggagacgctgccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctggccgtgctgcgccgcctggcccacccgcgtcccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcgcccgtgcgttccgtgctccagccgcaggtc
aagggtctgggcgacctggagccggtcgccctgcggaccgggcagagcgccgacctgaac
gaggtcgtcgaagccctcgccgccgccgcgtacgcgcgggtggagctggtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccg
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggcgccgccgtgccgtgagctgctg
ctcaccgacgacgtgcgggagcgggcgcgggtcctcgccgagcagcacccggagctcggc
gaactgctcgggaagatcgccgaggggatcgcggtggagggcatggagtccctggctccg
gtcctcgtcgacgacatggagctgctgctggacgtgctgcccaagggcgccatggccgtc
gtctgcgacccggagcgggtgcggacgcgggccgcggacctggtggcgacgagccaggag
ttcctgcaggcgtcctgggcggccacggcgatgtcccgtgcggacgaagcccgctccggc
gagggcggtggcgggcgacgggcgggcggtcaggcgcccatcgacgtcggcgcggcctcc
ctgtggtccatcgcggacgtccgggaccgggcccgcgagctggacatgatgtggtggtcg
gtgtcgccgttcgccgccgacgaggagctcacggggacatatgccgctgacgcggcgggg
gacacgctcaagctgggcatgcacgcccccgagtcctaccgcggcgacaccgcgcgggcg
ctggccgacaccaagggctggctcgccgacggctggcgcacggtctacgtcaccgagggc
cacggcccggccgcccggaccgtggaggtgctgggcggcgagggcatcgcggcccgcctg
gacaccgacctcggtgagatcagcccgtccgtcgtgcacgtcgcctgcggctgcatcgac
ctcggcttcgtcgacccggcgctcaggctcgccgtgctcaccgagaccgacctgaccggc
cagaaggcctccggccgcgagggcgcccggatgccggcccggcgccgcaagaccatcgac
ccgctcaccctggaggcgggcgactacatcgtccacgagcagcacggcgtcggccgctac
atcgagatggtgcagcgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtac
gcgcccgccaagcgcggccagcccggcgaccggctctacatccccaccgaccagctggag
cagatcaccaagtacgtcggcggcgaggcccccaccctgcaccgcctcggcggcgccgac
tggaccaagaccaaggcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatc
aagctgtacagcgcgcgcatggccgcccccggccacgccttcgccgccgactcgccctgg
cagcgcgaactggaggacgccttcccgtacgcggagacgcccgaccagctgaccacgatc
gccgaggtcaaggaggacatggagaagtcggtcccgatggaccgtctgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgggccgccttcaaggccgtacaggacggc
aagcaggtcgccgtgctcgtgcccacgacgctgctggtgcagcagcacttcgggacgttc
agcgagcggtacgcgcagttcccggtcaatgtgcgggcgctgtcccgcttccagacggac
accgaggccaaggcggtcctggagggcctgcgggacggctccgtggacgtcgtcatcggc
acccaccgcctgttctcctccgagacgaagttcaaggacctgggcctggtcatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtc
gacgtgctgaccatgtccgccacgcccatcccgcgcaccctggagatggcggtcaccggc
atccgtgagatgtccacgatcaccacgccgccggaggagcgccacccggtactcaccttc
gtcggcccgtacgagcagaagcagatcggcgccgccatccgccgtgaactgctgcgcgag
ggccaggtcttctacatccacaaccgggtcgagtccatcgaccgcgcggcggcccggctg
cgcgagatcgtgcccgaggcgcggatcgccaccgcccacggacagatgtcggagtcggca
ctggaacaggtcgtcgtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacg
atcgtcgagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggcgac
aacttcggcctcagccagctgcaccagctgcgcggccgggtcggccgcggacgcgagcgc
gggtacgcgtacttcctgtacccgccggagaagccgctgacggagaccgcgcacgagcgc
ctggcgaccatcgcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggac
ctggagatccgcggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggc
gtcggcttcgacctgtacgtgcggatggtcggcgaggcggtggcggactaccggcggcag
ctggagaccggcgggatcgaggaggaaccgccgctcgaggtcaagatcgaactgcctgtc
gacgcgcacgtcccgcacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgc
gcgatcgcctcggccaacaccgaggacgacatcaaggcggtgcgcgaggaactggtcgac
cgctacggcaagttgccggagccggtggagaacctgctgctggtggcgggcctgcggatg
ctcgcgcgggcgtgcggtgtcggcgagatcgtgctccagggcacgaacgtgcggttcgcg
ccggtggagttgcgcgagtcccaggagctgcggctgaagcgcctgtacccgggcacggtc
gtcaagccggccgcccaccaggtgctggtgccgcgtccgaagaccgcggaggtcggcggg
aagccgctggtcggacgggaactgctcggctgggtcggggagttcctgacgtccgtgctg
gggtcctga
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integrated database retrieval system
