Streptomyces atratus: C5746_17020
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Entry
C5746_17020 CDS
T07374
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sata
Streptomyces atratus
Pathway
sata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C5746_17020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sata03400
]
C5746_17020 (mfd)
Enzymes [BR:
sata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C5746_17020 (mfd)
DNA repair and recombination proteins [BR:
sata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C5746_17020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXE78351
UniProt:
A0A2Z5JDB7
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All DBs
Position
complement(3777240..3780818)
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AA seq
1192 aa
AA seq
DB search
MSLHGLLDVVVRDPALSEAVKAATDGHRMHVDLVGPPAARPFAVAALAREAGRTVLAVTA
TGREAEDLAAALRTLLPPDTIAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVKVVVAPVRSVLQPQVKGLGDLEPVALRIGQSADLGKTVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEIAQHGLWAPPCRELL
LTDEVRERAAALAEAHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKDSMAL
VCDPERVRTRAADLVATSQEFLQASWAATAMSSADEVRSGKGGGGRRVGEAPIDVGAASL
RGIADVRDRARELGMMWWSVSPFAADEELDEDTLKLTMHAPESYRGDTARALADTKGWIA
DGWRTVYVTEGQGLASRTVEVLSGEGIAARLDPDLAEISPSLVHVSCGAIDQGFVDPALK
LAVLTETDLTGQRTATKDLGRMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQ
GATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAK
KAVKEIAADLIKLYSARMAAPGHVFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEK
SVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPV
SVRALSRFQSESESKSTLEGLREGSVDLVIGTHRLFSNETRFKDLGLVIVDEEQRFGVEH
KEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQI
GAAIRRELLREGQAFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFW
EKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPP
EKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRM
VGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEDD
IRAVREELTDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQEL
RLKRLYPKTIIKPAVHQILVPRPTTGRIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggcctgctggatgtcgtcgtacgtgacccggcactctccgaagcggtg
aaggccgccaccgacggccaccggatgcacgtcgacctcgtcggtccgcccgctgcccgc
cccttcgccgtggccgcgctggcccgtgaggccgggcggaccgtgctcgccgtcaccgcg
accggccgggaggccgaggacctggcggccgcgctgcgcaccctgctgccgccggacacg
atcgccgagttcccgtcctgggagaccctgccgcacgagcggctctcgccccgctccgac
accgtgggccgccgcctcgccgtgctgcgccgcctggcgcacccgagggcggacgacccg
gagaccggcccggtcaaggttgtcgtcgcgccggtccgctccgtgctccagccacaggtc
aaggggctcggcgacctggaacccgtagcgctgcgcatcggacagagcgccgacctcggc
aagacggtcgacgcgctcgcggcagcggcgtactccagggtcgaactggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
cttcgagtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggagatcgcccagcacgggctgtgggcaccgccctgccgcgagttgctg
ctcaccgacgaggtgcgggagcgggccgccgcgctcgccgaggcccaccccgagctgggc
gaactcctcaacaagattgccgaggggatcgcggtggagggcatggagtccctcgccccg
gttctcgtcgacgacatggagctgctgctcgacgtgctgcccaaggactcgatggcgctg
gtctgcgacccggagcgggtccgcaccagggcggcggacctggtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgatgtccagcgcggacgaagtccgctccggc
aagggtggtggtgggcgacgggtgggagaggccccgatcgatgtcggcgcggcctccctg
cggggcatcgcggacgtccgtgaccgggcccgcgagctggggatgatgtggtggtcggtc
tccccgttcgccgcggacgaggagctcgacgaggacaccctcaagctcacgatgcacgcc
ccggagtcgtaccgcggcgacaccgcccgcgcgctcgccgacaccaagggctggatcgcc
gacggctggcgcacggtgtacgtcaccgagggccaggggctcgcctcccgtaccgtcgag
gtgctgagcggcgagggcatcgcggcccgcctggaccccgacctggcggagatctccccg
tcgctggtccacgtctcctgcggcgcgatcgaccagggcttcgtcgacccggcgctcaaa
ctcgccgtgctcaccgagacggatctgaccggccagcgcaccgccaccaaggacctgggc
cggatgccggcccgccgccgcaagacgatcgacccgctgacgctggagaccggcgactac
atcgtccacgaacagcacggtgtgggccgctacatcgagatggtgcagcgcaccgtgcag
ggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaagcgcggccagcccggc
gaccgcctctacatcccgaccgaccagctggaacaggtcaccaagtacgtcggcggcgag
gcgcccaccctgcaccggctcggcggcgccgactggacgaagaccaaggcgcgcgccaag
aaggccgtcaaggagatcgccgccgacctgatcaagctctactcggcccggatggcggcc
cccggccatgtcttcggccccgacaccccgtggcagcgcgaactggaggacgccttcccg
tacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggaggacatggagaag
tccgtcccgatggaccggctgatctgcggcgacgtcggctatggcaagacggagatcgcg
gtacgggcggccttcaaggcggtccaggacggcaagcaggtcgccgtcctcgtgcccacg
accctcctggtccagcagcactacggaacgttcaccgagcgctactcccaattcccggtc
agcgtacgggcgctgagccgcttccagtccgagtccgagtccaagtcgaccctggaagga
ctccgtgagggctccgtcgacctggtcatcggtacccaccgcctcttctccaacgagacg
aggttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcac
aaggagcagctgaagaagctccgcgccaacgtggacgtcctcaccatgtccgcgacaccc
atcccccgtacgctcgaaatggccgtgacgggcatccgcgagatgtcgacgatcaccaca
ccccccgaggagcgccacccggtcctcaccttcgtcggtccgtacgaggagaagcagatc
ggcgcggcgatccgccgtgaactgctccgcgagggccaggcgttctacatccacaaccgc
gtcgagtcgatcgaccgcgccgccgcgcgcctgcgcgagatcgtccccgaggcgaggatc
gcgaccgcccacggccagatgtccgaacaggccctggaacaggtggtggtggacttctgg
gagaagaagttcgacgtcctggtctccacgacgatcgtcgagtccggcatcgacatctcc
aacgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcccagctccaccag
ctgcgcggccgcgtcggccggggccgcgaacgcggctacgcgtacttcctctaccccccg
gagaagccgctcaccgagacggcccacgagcgcctggccacgatcgcccagcacaccgag
atgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggcgccggaaacctc
ctgggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctgtacgtacgcatg
gtcggcgaggcggtggccgactaccgggcctccctcgaaggcggcgtggaggaggagccg
ccgctggaggtcaagatcgagctcccggtcgacgcacacgttccccacgactacgccccc
ggcgagcggctgcgcctccaggcgtaccgcgccatcgcctccgccaacacggaggacgac
atcagggcggtccgcgaggaactcaccgaccgctacggcaagctccccgagccggtcgag
aacctcctcctggtcgcgggccttcgcatgctggcccgcgcctgcggcgtcggcgagatc
gtgctccagggctcgaacatccggttcgccccggtcgagctgcgcgaatcgcaggagctc
cgcctgaagcgcctctacccgaagacgatcatcaagccggccgtccaccagatcctggta
ccccgccccaccaccggcaggatcggcggcaagccggtcgtcggccgcgaactgctggcg
tggacgggggagttcctcactacgatcctggggtcgtga
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