Sinomonas atrocyanea: SA2016_3491
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Entry
SA2016_3491 CDS
T04286
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
satk
Sinomonas atrocyanea
Pathway
satk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SA2016_3491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
satk03400
]
SA2016_3491
Enzymes [BR:
satk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SA2016_3491
DNA repair and recombination proteins [BR:
satk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SA2016_3491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AMM34151
UniProt:
A0A127A5H1
LinkDB
All DBs
Position
3760484..3763138
Genome browser
AA seq
884 aa
AA seq
DB search
MAAQRETVEIEGRRISLSNLDKIMYPESGTTKGDVIEYYRMVGPVMIPAIRDRPATRKRW
VHGVGTADDPGELFFQKNLDERSTPEWVQRVTLHHRRSTNTYPLVNDLPTLVWLAQIAAL
EIHVPQWRAVEEDTMINPDRLVIDLDPGPGAGLPECVEVAHLVKPIFDDMGLLSVPVTSG
SKGIHLYAKLDGSQEWEAVSAVARELAKSLEADHPDLVVADQKKTLRHGRVLVDWSQNSG
QKTTIAPYSLRGRVQPMVAAPRTWEEIGSPGLAHVRYTEMAERLETFGDLFAPLHPPALA
GTHDSSRSSRPRARAAAGARSGSSSGSRSSGEDDDGGARAPSSAASAGGTAAAGADPLTV
YRAKRDAAKTPEPVPAEAPTPGAGDAFVIHEHHARRLHWDLRLEHEGVLASFAIPKGIPT
STGKNHLAVHTEDHPLEYLTFSGSIPQGEYGAGDMSVWDTGTYEAEKWREDEIIVILHGR
EGGGLESVAEGLAGGGNPPGGGVRLALIRTEKGSAGKENWLAHLMKDQAKGHWRRGPHAG
AGAPDAEVGAPATSGPPATSGPPATSGAPASPMLAQSGTAGLVRHGDWMFEMKWDGIRAI
VDTRAGSARLISRNGIDQTLTYPELADLAELGAAVLDGEIIAQSPTGRPDFGLLQQRMNL
SRPTDVERARRAVPVQIVLFDLLEYEGRDLTGLPFRERRAALELLAEGGLPASAQLSPVF
DGSIDDVLEASAEHGLEGVIAKRPSARYEAGRRSGAWVKIKHEKTQEVVVAGWREGKGGR
AGTVGSLLLGIPDDDGVLRYAGRVGSGFTDRMLAEVSSRLRPLERKTPPLDGVPREDTRD
AHWVTPKLVAEVRYGELTSGGRLRHPVWRGWRPDKAAADVVLEG
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcagcgcgagaccgtcgagatcgagggccgcaggatcagcctgtccaacctg
gacaagatcatgtaccccgagtccgggaccaccaagggcgatgtcatcgagtactacagg
atggtcggccccgtcatgatcccggccatccgggacaggcccgcgacccggaagcggtgg
gtgcacggcgtgggcaccgcggacgatccgggggagctgttcttccagaagaacctcgac
gagcgatccactcccgagtgggtccagcgggtcacgctccaccaccgccgctcgaccaac
acctatcccctggtcaacgacctgcccaccctcgtctggctcgcccagatcgccgccctc
gagatccacgtgccgcagtggcgcgcggtcgaggaggacaccatgatcaacccggaccgg
ctcgtgatcgacctcgatccgggcccgggcgcggggctgcccgagtgcgtcgaggtcgcg
cacctggtcaagccgatcttcgacgacatgggcctgctgtccgtcccggtcacgagcggg
tccaagggcatccacctctacgcgaagctcgacggcagccaggagtgggaggccgtctcc
gccgtggcccgcgagctcgcgaagtccctcgaggcggaccacccggacctcgtggtcgcc
gaccagaagaagacgctccggcacggccgcgtgctcgtggactggagccagaacagcggg
cagaagaccacgatcgccccgtactcgctgcgcggccgcgtccagccgatggtcgccgcc
ccgcggacctgggaggagatcggctcccccggcctggcgcacgtgcgctacaccgagatg
gcggagcgcctcgagacgttcggggacctgttcgcgccgctgcacccgcccgcgctggcc
gggacgcacgattccagccgctcgtcccgcccgcgggcccgcgccgccgccggtgcccgc
tcgggttcctccagcggttcccgctcctccggcgaggacgacgacggcggcgcccgcgcg
ccgtcgtccgccgcatccgccgggggcaccgccgcggccggagccgacccgctcacggtg
taccgggccaagcgggacgccgccaagactccggaaccggtcccagccgaggcgcccacg
cccggcgccggcgacgccttcgtgatccacgagcaccacgcgcgccggctgcactgggac
ctgcggctcgagcacgagggggtgctggcctcgttcgccatccccaagggcattccgacc
agcaccgggaagaaccacctcgccgtgcacaccgaggaccatccgctcgagtacctcacc
ttctccggcagcatcccgcagggcgagtacggggccggcgacatgtccgtctgggacacc
ggcacctatgaggccgagaagtggcgcgaggacgagatcatcgtgatcctgcacggacgc
gagggcggcgggctcgagtccgttgccgaggggctggccggcggcgggaatccgccgggc
gggggcgtccggctcgcgctcatccgcacggagaaggggtccgccgggaaggagaactgg
ctcgcgcacctcatgaaggaccaggccaaggggcactggcggcgcggcccccacgccggg
gccggggcgcccgacgccgaggtcggggcgcccgcgacgtctgggccacccgcgacgtcc
gggccacccgcgacgtccggggcgcccgcctccccgatgctcgcccagtccggcacggcg
ggcctggtgcggcacggcgactggatgttcgagatgaagtgggacggcatccgcgcgatc
gtggacacccgggccggctcggcccggctgatcagccgcaacgggatcgaccagaccctc
acctatcccgagctcgccgacctcgccgagctcggggccgccgtgctcgacggcgagatc
atcgcccagagcccgaccggccgccccgacttcgggctcctgcagcagcgcatgaacctc
agccggccgaccgacgtcgagagggcccggcgggcggtgcccgtgcagatcgtgctgttc
gacctgctcgagtacgaggggcgcgacctcaccgggctgccgttccgcgagcgccgggcg
gccctcgagctcctcgccgagggcggcctgcccgcgagcgcgcagctctcccccgtcttc
gacggcagcatcgacgacgtcctggaggcctccgccgagcacggcctcgagggcgtcatc
gccaagcgtccctcagcccgctacgaggccggccgccgctcgggcgcgtgggtgaagatc
aagcacgagaagacccaggaggtcgtggtggccggctggcgcgaggggaagggcggccgg
gcggggacggtcggctccctcctgctcggcatcccggacgacgacggcgtgctgcggtac
gcgggccgggtcggctcgggcttcacggaccgcatgctcgccgaggtctcgtcccggctg
cgccccctcgagcgcaagaccccgcccctcgacggcgtgccccgggaggacacgcgggac
gcccactgggtcacgccgaagctcgtcgcggaggtccggtacggggagctcacgagcggc
ggacgactccgtcaccccgtctggcggggctggcggccggacaaggccgcggcggacgtg
gtgctggagggctga
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