Streptomyces auratus: SU9_013390
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Entry
SU9_013390 CDS
T07630
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sauh
Streptomyces auratus
Pathway
sauh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sauh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SU9_013390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sauh03400
]
SU9_013390 (mfd)
Enzymes [BR:
sauh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SU9_013390 (mfd)
DNA repair and recombination proteins [BR:
sauh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SU9_013390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Nif11
Motif
Other DBs
NCBI-ProteinID:
QTZ92349
UniProt:
J2JZP5
LinkDB
All DBs
Position
complement(3168756..3172361)
Genome browser
AA seq
1201 aa
AA seq
DB search
MSLTGLLDAVVQDPALAEAVQAAADGKRPHVDLVGPPAARAFAVAALARQAGRPVLAVTA
TGREAEDLAAALRSLMPAGEDNSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRP
DDPTAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGETADLEEIVDGLAAAAYSRVELV
ERRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTEDVRARAAALAERHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPAGS
MAVVCDPERVRTRAADLVATSQEFLQASWAAAAMSSTDEVRSVTGGGGRRAGAGGGAAPI
DVGAASLWGIADVRDRARELGMMWWSVSPFAADEDLTADGDTLKLGMHAPDTYRGDTQRA
LADTKQWLADGWRTVYLTEAHGPAARTVEVLSGEGIAARLDGDLPEISPSVVHVSCGSLD
NGLIDPGQKLAVLTETDLSGQKAAGKDAARMPARRRKTIDPLTLQAGDFIVHEQHGVGRY
LEMVQRTVQGATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGAD
WTKTKARAKKAVKEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTI
AEVKEDMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHHGTF
TERYGQFPVNVKALSRFQTDSEAKAVLDGLREGSVDLVIGTHRLFSSETKFKDLGLVIVD
EEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTF
VGPYEQKQIGAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESQ
LEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRER
GYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAG
VGFDLYVRMVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRA
IASATSEEDIAAVREELTDRYGKLPEPVENLLLVAGLRMLARACGVCDITLQGANVRFGP
VELRESQELRLKRLYPRTVLKPAAQQVLVPRPTTGKIGGKPVVGRELLAWTGEFLSTILG
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacaggacccggcgctcgccgaagcggta
caggccgcggccgacggaaagcggccgcacgtggatctggtggggccgcccgccgcccgc
gcgttcgccgtcgccgcgctcgcccggcaggccggccgcccggtgctcgcggtgaccgcc
accggccgggaggcggaggacctcgccgccgccctgcgtagcctgatgccggccggcgag
gacaactccgtcgtcgagttcccgtcctgggagacgctgccgcacgagcggctctcgccg
cgctcggacaccgtcggccggcgcctcgcggtgctgcgccggctcgcccacccgcgcccg
gacgaccccacggccggccccgtctccgtcgtcgtcgcccccgtccgctcggtgctccag
ccgcaggtcaaggggctgggtgacctggaaccggtcagtctgcgcacgggcgagaccgcc
gacctcgaagagatcgtcgacggtctggcggcggctgcgtactcccgagtcgagctggtc
gagaggcgcggcgagttcgccgtccgcggcggcatcctggacgtcttcccgccgaccgag
gagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatccgctatttcaag
gtcgccgaccagcggtccctggaggtcgccgaacacggcctgtgggcgccgccgtgccgg
gagctgctgctgaccgaggacgtccgcgcccgcgccgccgccctcgccgagcgccacccc
gagctgggcgaactcctcggcaagatcgctgaggggatcgccgtggagggcatggagtcg
ctcgccccggtcctcgtcgacgagatggagctgctgctcgacgtgctgccggccgggagc
atggcggtggtctgcgacccggagcgggtgcggacccgcgccgccgacctggtggcgacg
agccaggagttcctgcaggcgtcgtgggcggcggccgcaatgtccagcacggacgaagtc
cgttccgtaacgggcggtggtgggcgacgggcgggcgccggtgggggagcggccccgatc
gatgtgggcgcggcgtccctgtggggcatcgccgacgtccgggaccgggcccgtgagctg
ggcatgatgtggtggtcggtctcccccttcgcggccgacgaggacctgacggcggacggc
gacaccctcaagctgggcatgcacgcccccgacacctaccgcggcgacacccagcgcgcg
ctcgccgacaccaagcagtggctcgcggacggctggcgcacggtctacctcaccgaggcg
cacggccccgcggcccgtacggtcgaggtgctcagcggggagggcatcgctgcccgcctg
gacggcgacctccccgagatctccccctccgtcgtgcatgtctcctgcggttccctcgac
aacggcctcatcgacccggggcagaagctcgccgtcctgaccgagaccgacctctccggc
cagaaggcggccggcaaggacgcggcccggatgccggcccgccgccgcaagaccatcgac
ccgctgaccctccaggccggcgacttcatcgtgcacgagcagcacggtgtgggccgctac
ctcgagatggtgcagcgcacggtccagggcgccacccgcgagtacctcctcgtcgagtac
gcgcccgccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctggaa
caggtcaccaagtacgtcggcggcgaggcccccaccctgcaccgcctcggcggcgccgac
tggaccaagaccaaggcccgcgccaagaaggccgtcaaggagatcgccgccgacctcatc
aagctctactcggcgcggatggcggcccccggccacaccttcggcccggacaccccctgg
cagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctcaccaccatc
gccgaggtcaaggaggacatggagaagtcggtccccatggaccgcctgatctgcggcgat
gttggatacggtaaaactgaaatcgctgtgcgagcggcctttaaagccgtccaggacggc
aagcaggtcgccgtcctcgtcccgaccacgctgctcgtccagcagcaccacggcaccttc
accgagcgctacggccagttcccggtcaacgtcaaggcgctgtcccgcttccagaccgac
agcgaggccaaggccgtcctcgacgggctgcgcgagggctccgtcgacctcgtcatcggc
acccaccggctgttctcctccgagaccaagttcaaggacctcggcctggtcatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaatgtc
gacgtcctgacgatgtccgccacccccatcccccgcaccctggagatggcggtcaccggc
atccgcgagatgtcgacgatcaccacgccccccgaggagcgccacccggtcctgaccttc
gtcggcccctacgagcagaagcagatcggcgccgccatccgccgtgaactcctgcgcgag
ggccaggtcttctacatccacaaccgggtggagtccatcgaccgcgccgccgcccggctc
cgcgagatcgtccccgaggcccgcatccagaccgcgcacggccagatgggcgagtcccaa
ctggagcaggtggtcgtcgacttctgggagaagaagttcgacgtcctggtctcgacgacg
atcgtcgaatcgggcatcgacatctccaacgccaacaccttgatcgtcgagcgcggcgac
aacttcggcctctcccagctccaccagctgcgcggccgggtgggccgcggccgcgagcgc
ggttacgcctacttcctctacccgccggagaagccgctcaccgagaccgcccacgagcgg
ctggcgaccatcgcccagcacaccgagatgggcgcgggcatgtacgtcgccatgaaggac
ctggagatccgcggcgcgggcaacctcctcggcggcgagcagtccggccacatcgccggc
gtcggcttcgacctctacgtacggatggtgggcgaggcggtcgccgactaccgcgcctcc
ctggaaggcggcgtggaggaggagcccccgctcgaagtcaagatcgaactcccggtggac
gcccatgtcccgcacgactacgcgcccggtgagcggctgcgcctccaggcctaccgcgcc
atcgcctcggccacctcggaggaggacatcgcggccgtccgcgaggagctgaccgaccgc
tacggcaagctgcccgaacccgtcgagaacctgctgctggtcgccggcctgcggatgctt
gcccgcgcatgcggggtctgcgacatcacgctccagggcgccaacgtccgcttcggtccc
gtggagttgcgcgagtcccaggagctgcggctcaagcggttgtatccgaggacggtcctc
aagccggccgcgcaacaagttcttgttccgcggcctacgacggggaagatcggcggcaag
ccggtggttgggcgcgagctgctcgcgtggacaggggagttcctctccaccattttgggc
tcgtag
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integrated database retrieval system
