Streptomyces autolyticus: BV401_23550
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Entry
BV401_23550 CDS
T04980
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sauo
Streptomyces autolyticus
Pathway
sauo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BV401_23550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sauo03400
]
BV401_23550
Enzymes [BR:
sauo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BV401_23550
DNA repair and recombination proteins [BR:
sauo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BV401_23550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF6207
SHLD2_C
Motif
Other DBs
NCBI-ProteinID:
AQA12978
UniProt:
A0A1P8XXT5
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All DBs
Position
complement(5854893..5855837)
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AA seq
314 aa
AA seq
DB search
MSEKRTDARNVRSGGRAVRISQPEKELFPGDGITKWDLVEYYRSVSRRIIPQLRGRPLMM
ERHPDGIGGKLLMQKNAPDYFPDWVRRAVLPKEGGEVVHVVCDNTATLLYLADQACVTPH
RWLSRADRPDHPDRLVFDLDPPSSGESGFEEVRWTARRCRGLLGELGLPGLLMTTGSRGL
HIIVPLDRRADFDTVRSFARDAADLLAARHPDRLTTEPRKANRRGRLYLDIQRNAYAQTA
VTPYAVRARPGAPVATPIDGRELDDPELRSDRWTLRTLRERLADDPWARTDTRGRSLRAP
RERLKRLAEGGGEG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaagcggaccgatgcacggaacgtcaggagcgggggccgcgccgtacggatc
agccagccggaaaaggagctcttccccggcgacgggatcacgaagtgggatctcgtcgag
tactaccgttcggtctcccggcgcatcattccgcagttgcgcggccgccctttgatgatg
gaacgccatccggacggaatcggcggcaagctgctcatgcagaagaacgcacccgactac
tttccggactgggtgcgccgcgccgtactccccaaagagggcggcgaggtcgtccatgtg
gtctgcgacaacaccgcgaccctcctctacctcgccgaccaggcatgcgtcaccccgcac
cgctggctctcccgcgccgaccggcccgaccaccccgaccggctggtcttcgacctcgat
ccgccctcgtcgggggagtccggcttcgaggaggtgcgctggaccgcccgccgctgccgc
gggctgctcggcgagctggggctgccggggctgctgatgaccaccggctcccgcggactg
cacatcatcgtcccgctggaccgccgcgccgacttcgacaccgtgcggtccttcgcccgc
gacgccgccgatctgctggccgcccgccaccccgaccggctcaccaccgagccgcgcaag
gccaaccggcgcggccggctctacctggacatccagcgcaacgcctatgcgcagaccgcc
gtcaccccgtacgcggtgcgcgcccgccccggagcccccgtcgccacgcccatcgacggg
cgggagctggacgacccggagctgcggtccgaccgctggacgctgcggaccctccgcgag
cggctcgcggacgacccctgggcccgtacggacaccaggggccgttcgctgcgcgccccg
cgcgagcggctgaagcggctcgcggagggcgggggcgagggctaa
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