Streptomyces autolyticus: BV401_27745
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Entry
BV401_27745 CDS
T04980
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sauo
Streptomyces autolyticus
Pathway
sauo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BV401_27745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sauo03400
]
BV401_27745
Enzymes [BR:
sauo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV401_27745
DNA repair and recombination proteins [BR:
sauo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BV401_27745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQA13660
UniProt:
A0A1P8Y086
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All DBs
Position
6769239..6772775
Genome browser
AA seq
1178 aa
AA seq
DB search
MSLTGLLDVVVRDPALAEAVRGAADGRRPHVDLVGPPAARPFAIAALARSAGRPVLAVTA
TGREAEDLAAALRSLLPPDGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRQDDP
AAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRAGRTADLEEIVDGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMTV
VCEPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELGMM
WWSVSPFAADEELAEDTVKLGMHATESYRGDTARALADTKGWLAEGWRTVYVTEGHGPAS
RTVEVLGGEGIAARLDGDLTEIKPSVVHVACGSIDYGFVDPGLKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLEAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYVETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGERYGQFPVNVKALSRFQTDTEAKA
VLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASIEAGD
GEVAEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIATATSEDDIRAVREELTDRYGK
LPEPVENLLLVAGLRLLARACGVTDITLQGANIRFSPVELRESQELRLKRLYQRSVIKPT
TKQVLVPRPATARIGGKPLVGRELLAWTGEFLTTILGS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaccggtctgctcgacgtcgtcgtaagggaccccgcgctcgccgaggcggtg
cgcggtgccgccgacggccgtcgtccccacgtcgatctggtcggcccgccggccgcccgc
ccgttcgccatcgccgcgctggcgcgctccgcgggccgtcccgtgctcgccgtgaccgcc
accggccgggaggcggaggacctggcggcggcgctgcgctcgctgctgcccccggacggg
atcgtggagtacccgtcctgggagacgctgccgcatgagcggctctcaccgcgctcggac
acggtcgggcggcgcctcgcggtgctgcgcaggctggcccatccgcgccaggacgatccg
gcggccggccccgtctcggttgtggtcgcgcccgtgcggtccgtgctccagccgcaggtc
aaggggctcggggacctggagcctgtgagtctgcgggccgggcggaccgccgatctggag
gagatcgtggacgggctcgcggccgccgcgtactcccgggtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcatccg
ctccggatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtggccgac
cagcgctccctggaggtcgccgagcacgggctgtgggcgccgccctgccgggagctgctg
ctgaccgacgacgtgcgggagcgggccgcggccctcgccgaggcccaccccgagctgggc
gaactgctcggcaagatcgccgaggggatcgcggtcgagggcatggagtccctggccccc
gtgctggtggacgacatggagctgctgcttgacgtcctcccggcgggcagtatgacggtc
gtctgcgagccggagcgggtgcgcacccgggcggcggacctggtggccaccagccaggag
ttcctccaggcgtcctgggcggccaccgccgggggaggggaggccccgatcgacgtcggc
gcggcctccctgtggagcatcgcggacgtccgcgaccgcgcccgtgagctgggcatgatg
tggtggtcggtgagccccttcgcggccgatgaggagctcgccgaggacaccgtcaagctg
ggcatgcacgccaccgagagctaccgcggcgacaccgcccgagcgctggccgacaccaag
ggctggctcgccgagggctggcgcacggtctatgtgaccgagggccacggccccgcctcc
cgcaccgtcgaggtgctcggcggcgaggggatcgcggcccggctggatggcgacctcacc
gagatcaagccgtccgtggtgcatgtggcctgcggctcgatcgactacggcttcgtcgac
ccgggcctgaagctggccgtgctgaccgagacggatctgtccgggcagaaggccgcgggc
aaggacggggcgcggatgcccgcgcgccgccgtaagaccatcgatccgctcaccctcgag
gcgggcgacttcatcgtccatgagcagcacggcgtcgggcgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtatctggtggtcgagtacgccccggccaagcgc
ggccagcccggcgaccggctcttcgtccccaccgaccagctggagcaggtcaccaagtac
gtgggcggggaggccccaaccctgcaccggctcggcggggccgactggaccaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaagctctactcggcg
cggatggcggcgcccggccatgccttcggagcggacaccccctggcagcgggagctggag
gacgccttcccgtacgtggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggttccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgcggccttcaaggcggtccaggacggcaagcaggtcgcggtg
ctcgtgcccacgactctgctggtgcagcagcacttcggcaccttcggcgagcggtacggc
cagttcccggtcaacgtcaaggcgctctcccgcttccagaccgacaccgaggccaaggcg
gtgctggaggggctgcgggacggggccgtcgacatcgtcatcggcacccaccggctcttc
tcctccgaaaccaagttcaaggacctgggcctggtcatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaatgtggacgtgctgaccatg
tccgccacccccatcccgcgcaccctggagatggcggtcaccggcatccgtgagatgtcc
acgatcaccaccccgccggaggagcgccacccggtgctgaccttcgtcgggccgtacgag
cagaagcagatcggcgccgccatccggcgtgagctgctccgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgggcggccgcccggctgcgcgagatcgtcccc
gaggcgcggatcgccaccgcccacggccagatgtcggagagcgccctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtcctggtctccacgaccatcgtcgaatccggt
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgggtcggccgcggccgcgagcgcggttacgcgtacttc
ctctatccgcccgagaagccgctcacggagaccgcccatgagcggctggccacgatcgcc
cagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgcggc
gcgggcaatctgctcggcggtgagcagtccggccatatcgcgggcgtcggcttcgacctc
tacgtacggatggtcggcgaggccgtcgccgactaccgcgcctcgatcgaggcgggcgac
ggcgaggtcgcggaggcgccgctggaggtcaagatcgagcttccggtcgacgcgcacgtt
ccgcacgactacgccccgggcgagcgtctgcgcctccaggcgtaccgcgccatcgccacc
gccaccagcgaggacgacatccgcgccgtccgcgaggagctcaccgaccgctacggcaag
ctccccgaaccggtggagaacctcctcctggtcgccgggctgcgcctgctggcccgcgcc
tgcggcgtcaccgacatcaccctccagggcgccaacatccgcttctccccggtggagctc
cgcgaatcccaggagctgcgcctcaagcgcctctaccagcgctcggtgatcaagccgacc
accaagcaggtcctggtaccccgccccgccaccgccagaatcggcggaaagccgctggtg
ggacgggagctgctggcctggaccggggagttcttgacgacgatcctggggtcgtga
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