Shewanella avicenniae: JYB87_00670
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Entry
JYB87_00670 CDS
T07845
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
savi
Shewanella avicenniae
Pathway
savi01501
beta-Lactam resistance
savi01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_00670
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB87_00670
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_00670
01504 Antimicrobial resistance genes [BR:
savi01504
]
JYB87_00670
Transporters [BR:
savi02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB87_00670
Antimicrobial resistance genes [BR:
savi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB87_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
Motif
Other DBs
NCBI-ProteinID:
QSX33802
LinkDB
All DBs
Position
complement(153164..156289)
Genome browser
AA seq
1041 aa
AA seq
DB search
MARFFIDRPIFAWVIAILIMLSGVLAIESLPVAQYPKIAPPTVVVSATYPGASAKTVEDS
VTQVIEQRMTGLDHMRYITSNSDSFGNAQVTITFNAEADPDIAQVQVQNKLQTAMTLLPQ
EVQAQGVRVNKSTSGFLMVLGFISEDGSMNKADIADFIGSTIQDPMSRVSGVGETQLFGA
QYAMRIWLDPLKLTQYNLTTADVTAAIQSQNAQVAAGQFGGAPAVPGQELNATITAQSRL
QTPAQFRRIILKSNAAGANVYLEDVARVELGAENYTITSLYNGQPASGLAIRLATGANAL
DTADAVRAKLDELKPNFPQGLKVIYPYDTTPFVKKSIEGVVHTLLEAIVLVFVIMYLFLQ
NFRATLIPTIAVPVVLLGTFAILSAAGYSINTLTMFAMVLAIGLLVDDAIVVVENVERVM
AEEGLSPKEATKKSMGQITGALIGIGATLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL
SVIVAIVLTPALCATMLKPVKKGSTHANTGFFGWFNRSFERFTNGYESVVAKFIKRSFRM
MVVYAGFVAIVAFLFTRMPTAFLPDEDQGMLMTVATLPPNSSQESTEQVLKKVSDMYQQE
HAVNSVFTVAGFSFAGRGQNMGMAFVNLKDWSERTAPQDKVQALAGRMMGAFSQFKDAMV
FAFVPPAIIELGTANGFDVYLQDLTGQGHEALVQARNQMLGMAAQNPKLMAVRPNGQEDA
PMYKLNVDHEKLKALGVEISTVNQTLATAWGSSYINDFIDRGRVKRVYVQGEAKYRMQPD
DLDKWYVRNNSGSMVPFSAFATGEWEYGSPRLERFNGLPAVNIQGAAAPGFSTGEAMEEM
ETLAKQLPPGFGLAWNGISYEERLSGNQAPGLYALSLLVVFLLLAALYESWSVPFAVILV
VPLGIIGALLAMDGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEKGAGLVEATL
HAVRVRIRPILMTSLAFGLGVVPLTVSSGAGSGSQHAIGTGVLGGMMSSTFLGIFFIPIF
FVVVERLFVKPKEKTDSAKAE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcttttttatcgatcgccccatttttgcgtgggtgatcgcaatacttatcatg
ctatcgggcgtgttggcgattgagtcgctgcccgtagcgcagtatccgaaaatcgctcct
ccgacagtggttgtttcagccacttaccctggggcgtccgcaaaaaccgttgaagactcc
gtcactcaggtgattgagcagcggatgacaggtcttgaccatatgcgttatatcacctca
aacagtgatagctttggtaacgcgcaagtcaccatcaccttcaacgctgaagccgatccc
gatatcgcgcaggttcaagtgcagaacaaactgcaaaccgcgatgaccttgctgccacaa
gaagtgcaagcacaaggggtacgggtcaacaagtcgacctcaggcttcttgatggtattg
ggctttatctcggaagatggctcaatgaacaaggcggatatcgccgactttatcggttcg
accattcaagacccaatgagccgggtatctggtgtaggtgaaacacagttgtttggtgcc
caatacgctatgcgtatttggctcgatccgctgaaactgacccaatacaacctgaccacc
gccgatgtgaccgcagcgattcaatcgcaaaacgcccaagtggccgccggtcaatttggt
ggtgcgcctgcagtaccggggcaagagctgaacgcgaccattaccgcgcaaagccgtttg
caaaccccagcgcagttccgccgtatcattctgaaatctaacgcagccggtgccaatgtt
tacttagaagacgttgcccgcgttgagctaggcgcagaaaactacaccatcacctcactg
tataacggtcaacctgcgagtggtttggcgatccgtttggccaccggtgccaacgcactg
gatactgccgatgcggttcgcgccaagttggatgagttaaagcctaactttccgcaaggc
ttaaaggtgatctatccatacgacaccaccccattcgtgaagaaatctatcgaaggggtt
gtgcatacgctgctggaagcgattgtactggtgttcgtgattatgtatctgttcttgcag
aacttccgtgcaacattgatcccaacaattgcggtgcctgtggtactgctgggcaccttc
gcgattctgtctgctgccggttactcgattaacaccttgaccatgttcgctatggtgctc
gccatcggtttgttggtggacgacgcgattgtggtggtggaaaacgtggagcgggtgatg
gccgaagaaggcctgagtccgaaagaagccaccaagaaatcgatggggcagatcactggc
gccttgattggtatcggagccaccttatcagcggtattcgtgccgatggcgtttatgtca
ggctcaactggggtgatttaccgtcagttctcgatcaccatcgtctcggcaatggcactg
tcagtgattgtggcgattgtgttgacaccggcattgtgtgccaccatgttgaaaccagtt
aagaagggttcaacccacgcgaacaccggcttcttcggttggtttaaccgcagctttgaa
cgattcaccaatggctatgaaagcgtggtggccaagttcatcaagcgctcattccgcatg
atggtggtttacgctggatttgtggcgattgtggcgtttttattcacccgtatgccaacc
gcgttcttgcctgatgaagaccaaggtatgttgatgactgtggcaaccttgccacctaac
tcatcacaagaaagcaccgagcaagtgctgaagaaagtgtctgacatgtatcagcaagag
catgcagttaactcagtgtttaccgtggcaggcttcagtttcgccggtcgtggtcaaaac
atggggatggcgttcgttaacctgaaagattggtctgaacgtactgcaccgcaagataaa
gtccaagcccttgctggccgtatgatgggtgcgttctcgcaatttaaagatgcgatggta
ttcgccttcgttccaccagccattattgaactgggtaccgccaacggtttcgacgtttat
ctgcaagacttgacaggtcaaggccacgaagcgctggtacaggcgcgcaaccagatgcta
ggcatggcagcgcaaaatcctaagttgatggcagtgcgtcctaatggccaagaagatgcg
ccaatgtataagctgaacgtagaccacgagaagctgaaagccttgggcgttgaaataagt
accgttaaccaaacgctggcaactgcatggggtagttcatacatcaacgactttatcgac
cgaggtcgggtaaaacgcgtgtatgtccaaggtgaagccaaataccgtatgcaaccagac
gacttagataagtggtatgtgcgcaacaacagtggctcaatggtgccattctcggcgttc
gcaactggcgaatgggaatatggctcacctcgtctagaacgtttcaacggcttgcctgcg
gtgaacattcagggcgcagcagcacctgggttcagtaccggtgaagcaatggaagagatg
gaaacactggctaaacaactgccgcctggttttggtttggcgtggaacgggatctcttac
gaggaacgtctgtcaggtaaccaagcgccaggcttgtatgcattgtcgctattagtggtg
ttcctgctgctggccgccttgtatgaaagctggtcggtgccatttgcggttattctggtg
gtgccattgggtattattggtgcgttgctggcgatggatggtcgcggactgtcaaacgac
gtgttcttccaagttggcttgttgaccaccgtcggtctggcgaccaagaacgccattttg
atcgtggaattcgctaaagagtactacgagaaaggcgcaggcttggtagaggcaacccta
cacgcggtacgggtgcggatccgtccaattctgatgacctcactggcgtttggtctcggg
gttgtaccgttaaccgtcagcagtggcgcaggctcaggcagccaacacgccattggtact
ggggtactcggcggtatgatgagctcaaccttcttgggtatcttctttatcccaatcttc
ttcgtggtggttgaacgtctgttcgtgaagccaaaagagaaaacggatagcgccaaggca
gaataa
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