Shewanella avicenniae: JYB87_08190
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Entry
JYB87_08190 CDS
T07845
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K19789
DNA repair protein RadD
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_08190
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
JYB87_08190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
AAA_16
SLFN-g3_helicase
AAA_22
zf-tcix
DZR
CobA_CobO_BtuR
zinc_ribbon_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QSX35165
LinkDB
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Position
complement(1834545..1836299)
Genome browser
AA seq
584 aa
AA seq
DB search
MSKTPAIQLRDYQQQAVDSVLRHFRHHSSSAVIVLPTGAGKSIVIAELARVARGKVLVLT
HVKELVEQNAEKVALMDTELSIYSAGLKQKHVDGKTVIASVQSAARNQTQFNAGFSLVII
DECHRVSDDDTSQYQQLLTTLKQHNPQLKVLGLTATPYRLDSGYIYKRHYHGKVGSESAI
FDDCIFELPLRYLVKKGYLTTPKTFDGLSAQYDFEQLSPAENGDYSPGEVDALIAHQGRA
TTAIIQQLIQLSEHRQGVIIFAATVRHAAEIMALLVEHNAALITADTPATERDQAISDFR
AKRIKFMVNVAVLTTGFDAPHVDLIAILRPTASAGLYQQMAGRGLRLAPNKPDCLIIDYA
ANGFDLFAPEIPQAKPASNAVPVQVPCPECGFANSFWGKVDADGDIIEHFGRRCQGLVGS
ERSQCTYRFRGKICPDCGAENDIAARNCHSCNSMMVDPDKRLKEVLTSRHHHLFRVDSMQ
LQDVGGVLQIDYFDIDGNQFSETFRLQTAAQRRALFAAFLKPHDRRAGLPFPQYSTAAAV
IDDARRFRQPDLLLLQKKPKRGWQLVDKFFDYQGRYQIGANFCD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacgccagcaatccaacttcgcgattatcaacaacaagccgtcgattcggtg
ttgcgccattttcgacaccacagttcgagcgcagtcattgtgttgccgactggcgctggc
aaaagtatcgttattgccgagctggccagagtcgcacgcggcaaggtgttggtactgacc
cacgtgaaggaattggttgagcaaaacgccgaaaaagtggcgttgatggataccgaatta
tctatctactccgcggggctgaagcaaaagcacgtcgatggaaaaacagtgattgcgtcc
gttcaatctgctgcgcgcaaccaaacgcaatttaacgccggattttcgttagtgatcatc
gatgaatgtcatcgcgtcagtgatgatgatacctcccaataccaacagttgctgaccacg
cttaaacagcataacccacagctgaaagtgctgggtctcacggcaacgccctaccgtttg
gatagcggttatatctataaacgtcattaccacggcaaggttggcagtgaaagtgcgata
tttgatgactgcatctttgaattgccgctgcgttatctggtcaaaaagggctatttaacc
acaccaaaaaccttcgatggcttgagtgcacagtatgattttgagcagttatctcctgct
gaaaatggcgactattccccaggtgaagttgatgcgctaatcgcccatcaagggcgtgcc
accaccgcgattattcagcaattgattcaactcagcgagcatcgccaaggcgttattatt
tttgctgccactgtgcgtcatgcagcagagatcatggcattgctcgttgaacataatgct
gcgttaattaccgccgacacgcctgccactgagcgcgaccaagcgatcagcgatttccgt
gctaaacggattaaatttatggtcaatgtggcggtactcaccacgggatttgatgcgccg
cacgtggatttaatcgcaatattgcgccccaccgcatctgcagggctataccaacaaatg
gccgggcgaggcctgcgtttagcgccgaataaacccgactgcttaattatcgattatgcc
gctaatggttttgatctgtttgcgccagagatcccccaagcaaagccagccagcaatgca
gtaccggtccaagtgccctgcccggaatgcggctttgctaacagtttttggggcaaggta
gatgccgatggcgatatcattgaacactttggcagacgctgtcagggcttagttggctca
gagagaagccaatgtacttatcgctttcgtggcaaaatctgccccgattgtggtgccgaa
aatgatattgcggcgcgcaattgccacagctgtaattcgatgatggtcgatcccgacaaa
cgtttaaaagaggtgttgactagccgccatcaccacctgtttagggttgatagcatgcaa
ctgcaagacgttggcggcgtgcttcagattgattacttcgatattgatggcaatcagttt
tctgaaacgttcagactgcaaaccgcagcgcaacgacgcgcgttatttgctgctttttta
aagccacatgaccgtcgtgctggcctaccttttccgcagtattccactgcagctgcggtt
atcgacgatgccaggcgctttcggcaacctgacctgctgttattgcaaaaaaaaccgaaa
cggggctggcagttagtcgataaattttttgactatcaaggtcgttatcaaattggtgca
aatttttgcgactaa
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