Shewanella avicenniae: JYB87_16600
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Entry
JYB87_16600 CDS
T07845
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
savi
Shewanella avicenniae
Pathway
savi01501
beta-Lactam resistance
savi01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_16600
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB87_16600
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_16600
01504 Antimicrobial resistance genes [BR:
savi01504
]
JYB87_16600
Transporters [BR:
savi02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB87_16600
Antimicrobial resistance genes [BR:
savi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB87_16600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF
WS_DGAT_C
Motif
Other DBs
NCBI-ProteinID:
QSX35554
LinkDB
All DBs
Position
complement(3771929..3775054)
Genome browser
AA seq
1041 aa
AA seq
DB search
MAKFFIDRPVFAWVIAIVIMLAGVFSIVKLPIAQYPDVAPPTISISATYTGADAQTVENS
VTQILEQQLTGIDGLLYFSSTSSSAGSASITVTFEQGTDADTAQVQVQNKVQQVTSRLPT
VVQSQGVTVTKSQSDFLLVFSLYDETDTASSNDVSDFLVSNMQDTIARIEGVGNIRVFGG
QHAMRIWLDPNKLAAYDLIPSDITSALRAQNTQVAAGNIGGMPTLDEQELNATVTAKSML
QTPEQFRQIIVKHNSDGADVKLEDVARVEIGSENYRSLPRLNGHPGSGMAVMLAPGANAL
TTARQVKDTIERMKSSFPDGYKVAFPRDSTDFIRISIEEVVKTLFEAILLVVLVMYVFLQ
NWRATLIPAIAVPVVLLGTFGVLQVFGYSINTLTMFGMVLSIGLLVDDAIVVVENVERLM
REEKLSPRAATIKSMQEISSALVGIAVVLSAVFLPMAFFGGSTGVIYRQFSITIVSSMLL
SVVVALTLTPTLCASLLKPSDANHSVKGVFGWFNRNFDSMTRRYEGRVAKVLNAPVRWMV
FYFAIVAVLGVLMYRLPTGFLPNEDQGNAMVQFNLPTGASIKRTRAVAEQIEQYFLTHEK
DNLNAIFTISGFSFAGNGQNSGMAFLSLKNWALRPGHENSAEAITRRASQHLASIRDARV
FAMSPSPIRGLGRSSGFTIELLANSGTTRDELASYKEELLQAARQDSLLSGVREGELSDS
PQLKVDIDDAKAMALGLTMSNVTSTLSTAWAGTYVNDFIDNGRVKRVYVQGDAPYRAAPS
DLGQWYVRGRDDNGSTSMTPFSAFSDIRWSSGPQSLSRFNGQASYQLQGAPNGVSSGEAM
AQIAGHVDNLPAGKTSYAWSGLSFQEQLAQGQTLLLYSISILVVFLCLAALYESWAVPFS
VILVIPLGVIGAAVAASVRGLENDIYFQVALLTTIGLSSKNAILIVEFAEEAYQRGKSAL
DAALEGARLRLRPILMTSLAFIFGTLPLALSTGAGANSRTSIGSGIVGGTLTATVLAVFL
VPLFFVLVRQLFPKRKPVHND
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagttttttatcgaccgtccggtatttgcgtgggtaatcgcgattgtgatcatg
ctggcgggggtgttctccatcgtcaagctgccaattgcgcaataccctgatgttgcaccg
ccgacgatcagtatctctgccacttacaccggtgccgatgcgcagacggtggaaaacagt
gtcacccaaattttggagcagcaactgaccgggattgatggcctgctgtatttttcctcc
accagttcatcggctggtagcgcgtcaatcaccgtaacctttgagcaaggcactgatgcc
gatacggcgcaagtgcaggtgcaaaacaaggtacagcaagtcacctcacggttgccgact
gtggtgcagtcgcaaggggtgacggtgactaaatcccaaagtgactttttgctagtgttt
tcgctttatgatgagaccgatactgcctcatcgaacgatgtgtcggactttttggtgtcc
aacatgcaagacactatcgcccgcatagaaggggtggggaacattcgggtatttggtggt
cagcatgcgatgcggatttggctcgacccaaataagttggcggcttatgacctcattcca
tcggatatcaccagtgcgcttcgcgcgcaaaacactcaggtagccgcaggtaatattggt
ggcatgccgacccttgatgagcaagaactgaatgcgacggtcaccgctaagtcgatgctg
caaaccccagagcagttccgccaaatcattgtgaaacataatagcgatggcgcagacgtt
aagctggaagatgtggcgcgggtggaaattggcagcgaaaactaccgttcattaccgcgg
ctgaatggtcatccaggctctggcatggcggtgatgctggcgcccggcgcgaacgcgtta
acgaccgcgcgacaagtgaaagacacgattgagcggatgaagagctccttcccagatggc
tataaagttgcgtttccgcgcgacagtaccgactttattcgcatctcgattgaagaagtg
gtgaaaacgctgtttgaggcgattttgctggtggtgttggtgatgtacgtcttcctgcag
aactggcgcgcgaccttgatccccgcgattgccgtgccggtggtattgctgggcaccttc
ggtgtgttgcaggtatttggctattctatcaataccttgaccatgttcggtatggtgctt
tctatcggtttgctggtggatgatgccattgtggtggtggaaaacgttgaacgtttgatg
cgcgaagaaaaattatcgccccgagccgccacgattaaatcgatgcaagagatcagctct
gccttggtagggattgcggtagtgttgtcggcggtatttttgccgatggccttctttggc
ggctcaaccggggttatctatcgccagttctcgatcacgattgtttcttccatgctgctg
tcggtagtagtggcgctgaccttaaccccaacactgtgcgccagcttgctcaaaccgagc
gatgccaatcacagcgtgaaaggtgtgtttggttggtttaaccgtaactttgacagcatg
acccgccgttatgaaggtcgggtggccaaggtattaaatgcgccggtacgttggatggtg
ttttattttgccatcgtcgcggtattgggggtgttgatgtaccgcctgcctaccggcttt
ttgccgaacgaagatcagggcaatgccatggtgcagtttaacctgccaactggagcctcc
attaagcgtacccgtgcagttgcagagcagattgaacaatattttctgacccacgagaaa
gacaaccttaatgctatctttaccatctctggctttagttttgcgggtaacggccaaaac
tcgggaatggcgtttttgtcgctgaaaaactgggcgttacgtccggggcatgaaaacagc
gccgaagctattacccgtcgcgccagtcaacatctggcatcgattcgtgatgcgcgggta
tttgccatgtcgccgtcaccgattcgcgggttaggccgtagcagcggctttactatcgag
ttgttggccaattccggtaccacccgtgatgagctggcaagctataaagaggagttgctg
caagcggcacgacaagactcactattgagtggcgtgcgtgagggcgagttgagtgactca
ccacagctgaaagtggatattgatgatgcgaaggccatggcgcttgggttaaccatgtcg
aatgtcactagcaccctgagcacagcttgggctggcacctatgtgaatgattttattgat
aatggtcgggttaaacgggtctatgtgcaaggtgatgcaccttatcgcgcagcgccgagc
gatttaggccagtggtatgtgcgtggccgtgacgacaatggcagcaccagcatgacgcca
ttttcggccttcagcgatattcgttggagctcggggccacagtcgctcagccgttttaat
ggtcaggcatcttatcagttgcaaggggcgccaaacggcgtcagttctggtgaggcgatg
gcgcaaattgctggacacgttgacaatctccccgccggcaaaaccagttatgcgtggagt
ggtttgtcgtttcaagagcagttagcccaagggcaaaccttattgttatatagcatctct
attctggtggtattcctctgtttggcggccttgtacgaaagctgggcggtaccgttttct
gtgattctggtgatcccgctgggggtgattggcgcggcggtggcggcctcagtccgtggt
ttggaaaacgatatttacttccaagtggcactgctgaccaccattggtttgtcatctaag
aacgcgattttgattgtcgaatttgctgaagaagcttatcaacgcggtaaatcggcgttg
gatgcggctttagaaggtgctcgtttacgtttgcggccgattctgatgacctcgctggcg
tttatcttcggtaccttaccattagcgctgtctacgggcgcgggtgcaaatagccgtaca
tcgattggttcagggattgtcggcggtaccttaaccgcaaccgtgttggcggtgttctta
gtgccgctgttttttgtgttggtgcggcagctgtttccgaagcgtaaaccggtacacaac
gattaa
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