Shewanella avicenniae: JYB87_17455
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Entry
JYB87_17455 CDS
T07845
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
savi
Shewanella avicenniae
Pathway
savi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYB87_17455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
savi03021
]
JYB87_17455 (rpoC)
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_17455 (rpoC)
Enzymes [BR:
savi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYB87_17455 (rpoC)
Transcription machinery [BR:
savi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYB87_17455 (rpoC)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYB87_17455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QSX33477
LinkDB
All DBs
Position
complement(3943681..3947892)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSYGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLILDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIQEMREELPSINSETRRKKVTKRLKLIEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRERVNGKGEGMAFASVAEAEKAYATG
AAELHARVKVRITETKIDENGQKQQVRRIVDTTVGRALLSTILPAGLPFEVVNQNMGKKQ
ISRLLNLCYRELGLKDTVIFADQLMYTGYYYATISGSSVGINDMEIPEEKYKLVAEAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASCNEKVSKAMMKNLSTETVINRNGEEEEQTSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLVMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGTEEVLAPRNTLLDEAWCKKLEEASVDEVRVRSVISCDTDFGVCACCYG
RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTLKL
HNAKFVTNVDGKLVIVSRSSELAISDELGREKERYKVPYGTILEKQDGDAIAAGEIIANW
DPHTHPIVTEVAGYVKFVDMLDGVTIQRQTDELTGLSSIVVMDVAQRPSAGKELRPAIRL
VDDHGADLFIPGTDVPAQYFLPGNSIVNLEDNTKINVGDAIARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEAYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGITKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITAAGDSEFLEGEQVEVSRVKIANRELEAQGKLPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKKRQAVKADVTQAA
PGITASEAEQNLADLLNLAGGNE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagtaagaccgaagaatttgaaggtatc
aagatcggcctcgcatcgcctgatctgatccgttcttggtcatatggtgaagtcaagaag
cctgaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgc
atctttggtccagtaaaagactacgaatgtttgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgaaaaatgtggcgtagaagttacccagactaaagttcgtcgtgag
cgtatgggccacatcgaactggcgagcccagtagcgcacatctggttcttgaagtcactg
ccaagccgtatcggtttgatcctcgatatgaccctgcgtgatatcgaacgcgtactgtat
ttcgaatcatacgtagttatcgagccaggcatgacaagcttggaacgcggtcaaatgctg
accgaagaaaactacctggatgctcttgaagagtacggtgacgaattcgaagcgaagatg
ggtgctgaagcagtacttgaactgctgcgtgcaatcgacttggaaaaagaaatccaagag
atgcgcgaagagctgccatctatcaactcagaaacacgtcgcaagaaagtgaccaagcgt
ctgaagctgatcgaagctttctacacttctggtaacaagccagagtggatgattctgaaa
gtattgccagtattgccacctgatctgcgcccattggtgccgttggatggtggtcgtttc
gctacttcagatctgaacgatttgtaccgtcgtgtgatcaaccgtaacaaccgtctgaag
cgtctgttggatctggctgcgccagatatcatcgttcgcaacgaaaagcgtatgctgcag
gaatctgtagacgcgctgctcgataacggtcgtcgtggtcgtgctatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcaggccgttcggtaattaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgcctaagaagatggctctggaactgttcaaaccattc
atctacggcaagctggaagcacgtggtcttgctaccaccatcaaagctgcgaagaagatg
gttgagcgtgaagtggcagaagtttgggacgtactggacgaagtgattcgtgaacatcca
gtaatgctcaaccgtgcaccaacactgcaccgtttgggtatccaagcgttcgagccagtg
ctgattgaaggtaaggcaattcagctgcacccattggtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttgacactggaagcacagttagaagcg
cgtgcgctgatgatgtctactaacaacatcctgtcgccagcgaacggtgagcctatcatc
gtaccttctcaagacgtggtcttgggcttgtactacatgagccgcgaacgtgtgaacggt
aaaggtgaaggtatggcatttgcctcggttgctgaggctgaaaaagcctatgcaacaggt
gctgctgaactgcatgcgcgcgttaaagtgcgtatcaccgaaaccaagattgatgaaaat
ggtcagaaacaacaagtgcgccgcattgtggataccacagtaggtcgtgcgttgttgtct
accattctgcctgctggtttgccatttgaagtggttaaccaaaacatgggcaaaaagcag
atttctcgtctgctgaacttgtgttaccgcgagctgggtctgaaagataccgttatcttt
gctgaccaactgatgtacaccggttactactatgcaaccatttctggttcttctgttggt
atcaacgacatggagatcccagaagagaaatacaaactggttgctgaagctgaagcggaa
gtattggaaatccaagaacagttccaatcaggtctggtgaccgccggcgaacgctacaac
aaagtgatcgacatctgggcaagctgtaacgaaaaagtatcgaaagcgatgatgaagaac
ctctctactgaaacggtaattaaccgtaacggtgaagaggaagaacaaacatcgtttaac
agcatctatatgatggctgactcaggtgcgcgtggtagtgcggctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcatcgaaaccccaatcgtt
gcgaacttccgtgaaggtttgaacgtactccagtacttcatctcaacccacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcaaactctggttacctgacacgtcgtctg
gtagacgtagcgcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtctg
gtgatgaagccgctgatcgaaggtggtgacgtagttgaaccattgcgtgaacgtgtactg
ggtcgtgtagttgctgaagacgtctactatccaggtactgaagaagtattggcaccgcgc
aacaccctgcttgacgaagcatggtgtaagaaactggaagaagccagtgtcgacgaagtg
agagtacgttcagttatctcttgtgatactgacttcggtgtgtgtgcatgctgttatggt
cgtgacttggctcgtggtcacctgattaaccaaggtgaagcaatcggtgtggttgcagca
cagtcaatcggtgaaccaggtacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatcgagagcatctgcagagaacaacgttcaagttaagaacgccggtactttgaagctg
cataacgctaagttcgttaccaacgttgatggcaaactggttatcgtatcgcgttcttct
gaactggcaatcagcgatgagctgggtcgtgagaaagaacgttataaagtaccttacggt
accatcttggaaaaacaagatggcgatgcaatcgctgctggcgaaatcatcgcaaactgg
gatccacacacgcacccaatcgtgaccgaagtagcaggttatgtgaagttcgtagatatg
ttggatggtgtgaccattcagcgtcaaaccgacgaactgaccggtctgtcttcaatcgtg
gtaatggatgtggcacaacgtccatcagcgggtaaagaattgcgtccagcaattcgtctg
gttgatgaccatggtgcggatctgtttatcccgggtaccgatgttcctgcgcagtacttc
ctgccaggtaactcaatcgttaacttggaagacaacaccaagatcaacgtgggtgacgcg
attgcacgtattccgcaagaatcgtcaaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacctgtttgaagcccgtaagcctaaagagcctgcgattctggcagaaatcagc
ggtactatctcattcggtaaagaaaccaaaggtaagcgtcgtctggtgatcacgcctgct
gatggtggcgaagcatacgaagagatgattccgaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaagttgaacgtggtgaagttatcgccgacggtccagagtcagctcatgacatt
ctgcgcctgcgtggtattaccaaagtggccaactacatcgtcaacgaagtgcaagacgtt
taccgtctgcagggtgtgaagatcaacgataagcacattgaggtgatcattcgccaaatg
ctgcgtaagtgcatcatcactgcagcaggtgactcagagttcttggaaggcgaacaggta
gaagtctctcgcgtgaagatcgctaaccgcgaactggaagcgcaaggtaagttaccggcg
aaattcgaacgcgaactgttgggtatcactaaggcctcgttggcaacagagtcatttatc
tctgctgcatcgttccaagaaaccacacgcgtactgaccgaagctgctgtaggtggtaag
tcagacaacctgcgtggtctgaaagagaacgtaatcgtgggtcgtctgatcccagcgggt
actggttatgcttaccataagaaacgtcaagctgttaaagctgatgtaactcaagcagca
cccggcattaccgcaagtgaagctgaacagaatttggcagatctgctgaatctggctggc
ggcaacgaataa
DBGET
integrated database retrieval system
