Sulfobacillus acidophilus TPY: TPY_0198
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Entry
TPY_0198 CDS
T01576
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPY_0198 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
say03400
]
TPY_0198 (mfd)
Enzymes [BR:
say01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPY_0198 (mfd)
DNA repair and recombination proteins [BR:
say03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TPY_0198 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEJ38413
LinkDB
All DBs
Position
206723..210241
Genome browser
AA seq
1172 aa
AA seq
DB search
MGELASLLELWSQYPPYQELLNRFRNGGHTVQITGLSGSLPSFMVASLTEHIQRPALVVT
AGFQEARRLEAELEAYRPEAPLYLLPARPHIVGDVRAESYEWHERRLKALDEAYHNPRAV
LVAPVEAVRQRVVAMAQERISLAPGQVIAPETVAEQLVHLGYVRDPEVEQEGHFAWRGAI
MDVFLPGGPAVRIEWFDDEVDSVRTFDPETQRTTQMLSRVSIGPARELIWSPEVLSRALA
RLGQESAEVIRNLEATGHFEEARRAEERYGRYWHDLSEGRSFPGVERFMAAFAAPKALVQ
VFSLKPLVIFHDLPRVLEAVRGQAVEAQLERERRLERGDFLPVEAELDIPPESLLAELKG
WNTVHLSLMAHGSRRDEDVFSLTGRPAPRVHGQADLLKTELTRLRKSRMKIGLVVRDEDA
RRLMMNHVLDSGLTPRPGLGVNGEIGVLLGTLSHGFVLPELGLALLGETELSGRDVKPET
RRRREARRTIRVGDLKPGDYVVHMTHGIGRFLGVRTLDIQGQHKDYLHIQYAGADTLYVP
VDQLGLVQKYVGVEGQEPRLSKMGGQEWTRTKEKVKASVREMAEELLKLYAKREAEPGIA
YGPDTPWQAEFEAAFPYEETPDQLRAIDDIKRDMERARPMDRLLCGDVGYGKTEVALRAA
FKAIMGGKQVAFLVPTTLLAEQHYQTAKSRLAGYPVTVEVLSRFRTPKQQKEILARVKKG
QVDLLVGTHRLLAKDVQFQDLGLLIVDEEHRFGVAHKERIKALKGNVDVLTLTATPIPRT
LHMALVGIRDMSVIETPPEDRLPVETVVAEYDEDLVREAIRRELDRGGQVFYVQNRIRSM
DRTVEHLMKLFPGIRLAVVHGQMEENRIEDVMARFIEQEYDILVTTNIIESGLDIPNANT
LIVEDADKMGLAQLYQLRGRVGRSSRLAYAYFTFHPDKVLTPAAEKRLEAIREFTELGAG
YQIALRDLEIRGAGNLLGAEQHGFIATVGFDLYTQMLAQAVQELKGEPVETPVDPTIEIA
VDAYLPDDYVPDPRQKIEMYKRLVSAKSLAEVEALAEEIEDRFGTAPASVTALVQLSRVR
VLARDVRLTQVSHKGDRILLGGGPDSRVGPEAIQRLASRFPGRLIPGTQRAPELGIKLPP
KASPDDALKTAEAVLTIMQEVSDHASAQTTHG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaactggcgagcctcctggagctgtggagccaatatcctccctatcaagagctg
ttgaaccggtttcgtaacgggggtcacacggtacagatcaccgggctttcggggtcgtta
ccctcttttatggtggcaagcctcacggaacacattcaacggccggccctggtcgtgacc
gccggttttcaagaggcccgtcggttggaagccgagctggaggcctatcggccggaggcg
ccgctatatcttttgccggcgcgcccccacattgtgggggatgtacgggccgaaagctat
gaatggcacgaacgccggcttaaagcgctggatgaagcgtatcataatcctcgcgcggtc
ttggtggcaccggtggaggcggttcggcaacgggtggtcgccatggcccaggaacggatc
agcctggccccgggtcaggtcattgccccggaaaccgtggccgaacagttggtccatctg
gggtacgtgcgggatccggaagtcgagcaagaggggcactttgcctggcggggcgcgatt
atggacgtgtttttgccgggggggccggcggtgcgtatcgaatggtttgacgacgaagtc
gattcggtgcggaccttcgatcctgaaacccaacggaccacccaaatgctgtcgcgggtc
agtattggtcctgcccgggaactcatttggagtcccgaggtgttaagtcgcgccctcgcg
cggctgggccaggaatcggccgaagtcattcgaaacctcgaagccacgggacattttgag
gaggcccggcgtgccgaagagcggtacggacggtattggcatgatctgagtgaaggccgg
agttttccgggtgttgagcgctttatggccgcttttgccgcgcccaaagcgttggtgcag
gtgttttccttgaaaccgttggtgatttttcacgatttgccgcgggtattggaagccgtt
cgcgggcaggcggtggaagcccaattggaacgggaacgtcggctggaacgaggagatttt
ttgccggtcgaagccgaattggacattcctccggagagccttttggcggaattaaaggga
tggaatacggtgcatctttccctcatggcgcacgggtcgcgacgggacgaggacgtgttt
tcgctgaccggtcggcccgcaccccgcgttcatgggcaggcggatttgttgaaaaccgaa
ctgacgcggttacgcaagtcgcggatgaaaatcgggttggtcgtccgtgacgaggacgcg
cgccggctcatgatgaaccatgtcttggatagcgggttgaccccacggcccggccttggc
gtgaacggggaaatcggcgtgttgctgggcacgctctcccacggttttgtcttgccggaa
ttggggctcgccctcttgggggaaaccgagttatccggacgggacgtcaagccggagacg
cgccggcgtcgggaggcgcgtcgtacgattcgggtgggggacttaaaaccgggggactat
gtcgtgcacatgacgcacgggattggccgctttctcggggtccggacgttggacattcag
ggccagcataaggattacctccacattcaatatgccggagcggatacgttatatgtgccg
gtcgaccagctggggctggtgcaaaagtatgtgggggtggaaggccaggaaccccgccta
tccaaaatgggcgggcaagaatggactcgtaccaaggaaaaggtcaaagcctccgttcgc
gaaatggcggaagaattgctgaaattgtatgccaaacgtgaagcggagccaggtattgca
tacgggcccgacacgccctggcaagccgagtttgaggccgcctttccctatgaggaaacg
ccggaccaattgcgggcgattgacgacatcaagcgggacatggaacgggcacgtcccatg
gatcgcttgttatgcggggacgtcggctatggaaaaaccgaagtggctttgcgggcagcc
tttaaggcgattatgggcgggaaacaagtggcatttttggtgccgaccacgctattggcg
gagcaacattaccaaaccgccaagtcccgtttagccggttacccggttacggtggaagtg
cttagccgctttcggacgccgaaacaacaaaaagagattttggcgcgggtcaaaaagggg
caggtggacttattagtcgggacgcatcggctcttggccaaagatgtgcaatttcaagat
ttaggattactgattgtcgatgaggaacaccggtttggcgtagcccacaaagaacggatt
aaggccctcaaagggaatgttgacgtgctcaccttaaccgcgacgccgattccccgcacg
cttcacatggcgctggtcggtattcgggatatgagcgtgattgaaacgccgccggaagat
cggttgccggtggaaaccgtggtggccgaatacgatgaagatttggtgcgagaagccatt
cggcgggagctggatcggggcggccaggtattttacgtccaaaatcgcatccgttctatg
gatcgcacagttgagcatttgatgaagctttttccgggtattcgactggcggtggtccat
gggcagatggaagaaaaccgtattgaagacgtgatggcgcgttttatcgaacaggaatat
gacattttggtcaccacgaacattatcgagtcgggactggatattccgaatgccaacacc
ctcatcgtggaggatgcggacaaaatgggtctggcccagctataccagttgcgggggcgg
gtcggccgctcgtcccggctcgcctatgcgtactttacgtttcatccggacaaagtgctg
acgccggccgccgaaaagcggttggaagccatccgcgaatttaccgaactgggggcaggc
tatcaaattgccctgcgggatttggaaattcggggagcgggaaatttgttgggggcggaa
caacacggctttatcgccaccgtcggatttgatctttatactcagatgctggcccaagcg
gtccaggaattaaagggggagccggtggaaacccctgtcgatccgacgattgaaatcgct
gtcgatgcctatttgccggatgactatgtgccggatccccgccaaaaaatcgaaatgtat
aagcgactggtttctgccaaaagcttagccgaggtggaggcgttagcggaggaaatcgaa
gatcgtttcgggaccgctcccgcttccgtaacagccttggtgcagctttcgcgagttcgg
gtgttggcgcgggatgtgcggctgacccaagtcagccataaaggcgaccggatcctcttg
ggcggaggacctgacagccgggtcggtccggaggccattcaacggttggcgtcgcgtttt
cccggccggctgataccgggaacccaacgggcgccggagttgggaattaagttgccgccg
aaagcgtcccccgacgacgcgttgaaaacggctgaggctgtcctgaccatcatgcaggag
gtctccgatcatgccagtgctcaaaccacccacggctaa
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