Shewanella amazonensis: Sama_1330
Help
Entry
Sama_1330 CDS
T00445
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saz
Shewanella amazonensis
Pathway
saz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sama_1330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_1330
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sama_1330
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sama_1330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABL99537
UniProt:
A1S581
LinkDB
All DBs
Position
complement(1619212..1622679)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSSFTVDRLPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAE
LGYLLKPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMV
RLPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSG
ASEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTF
ETVNNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHH
LGEIHSRYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDLSGDEGDKTLEAAPLPD
IRANHKLKQPLESLANWAQGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLAS
DSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE
LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN
DESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQG
FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV
PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT
ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEA
RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY
VNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAT
KIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLE
LLLEQLEQHSVGEGK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatttacggtagaccgtcttcccaagactccggccaaaggccgggtgtctgct
gtcaggctgcctggcggcgttgcccgcgccctgacattggccgaaatgacctgcagttac
gcgggtaccaccctgatagtgaccagtgatacccccacagccctggtgctggaggcagag
cttggttatttgctcaagccccgtggtatcgatatttgcctgtttcccgaccgggaaacc
ctgccctatgacagtttttcaccccaccaggatctgatttcccagcgtctcgaaaccctg
tccaatctggagcgtggcaaagggcgtttggttatcgtgcccctcacaactctgatggtg
cgtttgccacccaaggcattcctggccgccaatgtgcttattctaaaaaaaggcgaccgc
tatcagctgcagcagatgcgccagcatctggtggacacgggctaccacctggttgagcag
gtttatgagcacggtgaatttgccatccgtggatcgattctggatattttccccagcggt
gcgagcgagccactgcgcatagaactctttgacgatgaagtggagtcgattcgccatttc
gaccctgagactcagcgctccagcggcgaagtcgacagtattcggatgttgccggcaagg
gagttccctaccgacagccaggccatcgaaggctttcgtcagcgctaccgccgcaccttt
gagacagtcaacaacgcggcggaatctgtgtaccaattggtcagccgcaatctgatgccc
gccggtattgaaaactacctgccgctgttttttgatgacactgccaccctgttcgattat
ctgcccgaagagctgcaaatcatcacaacgggtgcgctgcatcaggcagcagaacatcac
cttggcgaaatccacagtcgctacgaagaccgacaggttgacccactgcgccccttgctg
ccgcccaagacgctgtaccagacaacagaagagctgtttgcccgctttaagctgtatccc
aggattgatttgtccggcgacgaaggtgataaaacccttgaagcagctcccctacccgat
atacgagccaaccataaactcaagcaaccgcttgaatccctggccaactgggctcaggga
ggtcagcgcatcgcctttgtggccgaatcggaaggtcgccgggaagcactgctggaactc
cttggcaaggcaggcttaaaacccaaactctttggccatctggatgagtttctggcctca
gacagccctcacggtctggtagtggcgccactcgctatgggctgtcagctgaaaatgggc
aaatcccagctcgccgtggtgtgtgaaaccgagctttttggtgagcgggtttctcaggag
cgacgccgggacaaacagcgccaactgagtcaggatgtgctcatcaaaaacctggccgaa
ctcaaggtgggtcagccggtggtacaccttgagcacggtgtgggtctgtatcagggattg
gaaaccctcgacacgggtggcctggtggccgagtacctcaagctcgaatacgccggtgga
gacaagctctatgtgcctgtatcggcgctgcatcttatcagccgttttgcggtgggtaac
gatgagtcggcgccgctcaatcgcctcggtaacgaaagctggagcaaggccaagcgcaag
gccattgaaaaaatccgtgatgtggcggcagagcttttggacgtttacgcccgccgcgaa
gcgcgccccggcgatccctgtaccttggatgaagccgaatacgcgcagtttgcccagggt
ttcccctttgaggaaaccgtggaccaggaaaccgccatcaaggcggttatcgacgatatg
tgccagcccaaagccatggaccgactggtgtgtggtgatgtgggctttggtaaaaccgaa
gttgccatgcgcgcagccttccttgctgtgtccagcggcaagcaggttgttgtactggta
cccaccacgctgctggcacagcaacattttgaaaactttaaagaccgcttcgccgattgg
ccagtacgcattgaagtgatgtcacgcttcaggaccgccaaagagcaacaggcggtgctg
tcggccatgggtgagggcaaggtcgatattgtgattggtacgcacaagcttttgaatacc
gagcttaatttcgagtctcttgggctgcttatcatcgacgaagagcacagatttggggta
cgtcagaaagagcgtatcaaggccatgcgggccaatgtggatattctgaccctgaccgcc
acccccattccccgcaccctgaacatggccatgtcgggtatgcgggatctgtccataatc
gccaccccgccggccaagcgtctggcggtgaaaacctttgtgcgtgaatacgacaaggcc
acggtgcgcgaggcgattctgcgggaaattctccgcggtggtcaggtgtactatctgcac
aatcaggttgaaaccatcgagaaggccgcacaggacattcgagaactgctgccggaagcg
cgggttgtgaccgcccacggacaaatgcgcgagcgcgagttggagcgggtcatgtcggac
ttttaccatcagcgctttaacgtgttggtgtgtaccaccatcatagaaacgggtatcgac
gttcccagtgccaacaccattttgatagacagggccgatcatttcggtttggcacaactg
caccagctgaggggccgcgttgggcgctcccatcaccaggcatatgcctacttgatgact
ccccatcccaagctgatgacggtggacgcccgcaaacggctcgaggccatcgatgccctg
gaagatttgggggcgggctttatgctcgcgactcaggatctggaaatccgcggcgccggt
gaactgcttggcgatgagcaaagcggccatatttccaagattggcttcagcctttacatg
gaaatgctggaaggcgccgtaaaggcactcaagcagggcaaagagccgtcactccggcaa
atgctgggcgctcagtgtgaaatcgacttacgtataccggcgctgctgcccgacgattac
gtaaacgatgtgaatatgcgactgtcactctataaacggatagctggctgtgacactgaa
aaggccgtggatgaaatgaaggtcgaacttatcgaccgcttcggcctcctgcccgatgcc
acccgtaacctgttaaccatgacagtacagaagcacagggccacccgactgggcgccact
aaaatcgagatgcacggccgtggcggcagtattgaatttggtgaagagcacagggtcgat
cccggttttatcatcggcttgctttcgtcacagccccaggtctatcgtatggacggcccc
aataaactcaggttcaccatgccttgcgaaaccgccaaggaaaggttggaactcctggaa
ctgctgctggagcagctcgaacaacacagcgttggagaaggaaaataa
DBGET
integrated database retrieval system
