Sphingobacterium bambusae: SCB77_22990
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Entry
SCB77_22990 CDS
T09645
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCB77_22990 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_22990 (ligD)
Enzymes [BR:
sbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCB77_22990 (ligD)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCB77_22990 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WPL48822
LinkDB
All DBs
Position
complement(5527681..5530170)
Genome browser
AA seq
829 aa
AA seq
DB search
MAALEAYNKKRDFDKTAEPKGAAARKSKKLRFVVQRHHASRLHYDFRLEMDGVLKSWAVP
KGPSLYPDDKRLAVMVEDHPLSYRTFEGEIPKGNYGFGTVSIFDSGYYTAVDNVHTEQDL
LEDLKQGSIKIVLHGKKLKGEFALVRIKNPQEDNAWLLIKHKDRYAVDEAYDAEDEVSAK
VKEAGRSFRKQQGKANTKAASGKTAEQDKKKNEKKGSATLLDPMLAVLSKAVPDDGDWIY
EQKFDGFRALAEISNSKVSLVSRNGINFNEQFPSIQEGLQGLDRTLILDGEIVAEDAKGK
ANFQLLQQGEPLPARYKLVYYVFDLLMLDDNDLRDFPLLERRDLLRRLFAKISAPQIKLV
PELKGDALQKAKKHNWEGVMAKEAGSRYHSGKRSDAWRKLKIQQSQEAIIVGFTAPNGSR
IGFGALVLAVWGADKTLQYIGNVGTGFTDELLQDLHAKLQRLLVKKKPFPATVKVANEKK
VTWVKPKLIAEIDYAEWTGDGHLRHPVFKALRTDKDVADIVKVEAVQAMSNEREIRFGRK
VLKLTNQQKLYWPKDKIRKGDLLHYYEQVGELMLPYLKDKPISLNRFPNGIEEASFFQKD
LDKKLGPSWLKTVELESESTGDTVNYLLCNDLPTLLWIANMGSIEINPWLATYRKQDRPV
FGVLDLDPNGVDFKTVLAIANTAHDILEAANVRSYVKTSGSTGLHIYIYVGQQYTFDVVR
DFIQMLAELVHEQHKKESSLERSPSKRKNKVYLDYMQNKRAQTVVAPYSVRPKPLATVST
PLDWSEVNDELTIQRFTMETLLERIAAQKDPWATIFDEPIDLKKAISAF
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcagccctagaagcatacaacaaaaagcgagatttcgataagacagcggaaccaaaa
ggtgctgctgcccgcaaaagcaagaaactgcgttttgtggtgcagcggcatcatgcctcg
cgcctgcattacgacttccgactggaaatggacggcgtgctgaagagttgggcggtgccc
aaggggccatccttataccccgacgacaaacggctggccgtgatggtggaagaccatccg
cttagctaccgtacctttgaaggcgaaattcctaaaggaaattatggcttcggtaccgta
tccattttcgattcgggatattataccgctgtagataatgtacataccgagcaggatctg
ctggaggacttaaagcaagggagtatcaagatcgtgctgcatggcaaaaagctcaagggc
gagtttgctttggtgcgcatcaagaatccgcaggaggataatgcctggctgctgatcaag
cataaggaccgctacgccgtcgatgaggcctacgatgccgaagatgaagtaagcgcaaag
gtgaaggaagcaggacgctcgttccggaaacagcagggaaaagctaacacgaaggcggct
tctggtaaaacagcagaacaggataaaaagaaaaacgaaaagaaggggtcggcgacccta
ttggatccgatgttggcggtgctgtctaaggctgttcccgatgatggcgattggatctat
gagcagaagttcgatggctttcgcgccttggccgagatcagcaacagcaaggtatcgctc
gtctcgcgcaacggcataaatttcaatgagcaatttccgtccatacaggagggcctgcaa
gggctcgacagaaccttgattttagatggagagatcgtggcagaggacgccaagggcaag
gccaatttccagctgttgcagcagggcgaaccgctgcctgcccgctacaagctggtttac
tatgtctttgatctcctaatgctcgatgacaatgatcttcgggactttcccctgctggag
cgtcgcgatctcctgcgcaggctttttgccaagatctccgcgccgcagattaagcttgtt
cccgaattgaagggagatgccctgcagaaagccaagaagcacaattgggaaggggtaatg
gccaaggaggccggcagccgctatcattcgggcaagcgttcggatgcatggcgcaagcta
aaaatccagcaatcccaagaggccattatcgtcggttttaccgcgccgaatggcagccgc
atcggctttggtgccttggtgttggcggtgtggggcgcggataaaaccttgcagtatatc
ggcaacgtcggaacgggctttacggacgaactgctgcaggacctgcatgccaagctgcaa
cgactgctcgtaaaaaagaaaccttttccggctacggtaaaggtagcgaacgaaaagaag
gtaacttgggtcaagcccaagctgattgccgaaatcgactacgccgaatggacaggcgat
gggcacctgcggcatcctgtttttaaggccttgcgtacagataaagacgtcgccgatatt
gtcaaggtggaggccgtgcaagcgatgtccaacgaacgggaaatacgcttcggacgaaag
gtcttgaagcttacgaaccagcagaaactgtattggcccaaagacaagattcgaaaaggc
gatttgctgcattactacgagcaggtaggcgagttgatgttgccctacctgaaggataag
cccatatccctcaatcgctttccaaatggcattgaggaggccagtttttttcaaaaagat
ctggataagaagctggggcctagctggttgaagaccgtggagctggagtcggaatccacc
ggcgatacggtaaattatctgctctgtaatgatctgcctaccttgctctggattgccaat
atgggctctatagagattaatccttggctggctacctaccgcaagcaggataggccggtt
ttcggggtattggacctggatcccaatggtgtagattttaagacggtgctggccatcgca
aatacggcacatgatatcttagaggcggccaatgtccgcagttatgtgaagacttccgga
tcaaccggactgcatatttatatttatgtagggcagcaatatacgtttgatgtggtgcgc
gattttatacaaatgctggccgagctggtacatgaacagcataaaaaggaaagcagcttg
gagcgttcgcccagtaagcggaaaaacaaggtttacttggactatatgcagaataagcgc
gcccaaacggttgtcgctccctattcggtgcggccgaagcccctggctacggtctctacg
ccgctagactggtcggaggtaaatgacgaactgaccatacagcgctttaccatggaaacg
ctgcttgagcgtatcgcggcgcaaaaagatccttgggcaacgattttcgatgaacccatt
gatcttaagaaggccatttctgcgttctaa
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