Sorghum bicolor (sorghum): 8064457
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Entry
8064457 CDS
T01086
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03022
Basal transcription factors
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8064457
09124 Replication and repair
03420 Nucleotide excision repair
8064457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8064457
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8064457
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
8064457
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
8064457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
8064457
NCBI-ProteinID:
XP_002448148
UniProt:
C5YBY0
LinkDB
All DBs
Position
6:complement(50443642..50448187)
Genome browser
AA seq
431 aa
AA seq
DB search
MYGVGGGGGGFNAPSTTAGRRRNPGDEEEDEEEEGGEGRVLEAWERAYADERSWESLQED
ESGLLHPIDTKALVHSQYRRRLLLRSAAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTEIGGSPESQIKALMGKLECSG
DSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTFDPGDIMETITKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVTPVPNRIQRGGQICFSCQQSLFNPDGQSNLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQRNITL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggtgggggcggcttcaacgcgccctccaccactgccggtcgg
cgccgcaacccgggcgacgaggaggaggacgaggaggaggagggcggtgagggccgcgtc
ctggaggcgtgggagcgcgcgtacgcggacgaacggtcgtgggagtcactgcaggaggat
gagtcgggcctcctccatcccatcgacaccaaggccctcgtacactcgcagtaccgccgt
cgcctcctactccgctccgccgcggcagccgctgcccgcatccaaaaggggctcatccgc
tacctctacatcgtcatagacctctcccgggcggcttcagagatggattatcgtcctagt
cgaatggcagttgttgcaaaacatgctgaggctttcataagagaattctttgaccagaat
ccgttgagccatgttggcctagtgacaattaaagatggtattgcccatcgacttacagaa
attggagggagcccagagtcacagattaaggctttgatggggaagcttgagtgttccggt
gattcatccctgcagaatgctctagaacttgttcatggttatttagatcaagtaccatca
tatggtcacaaggaagttctgattttatactctgccctgaatacatttgatcctggtgat
atcatggagacaataacaaaatgtaagaagtcaaaaattagatgctctgtcattggtctt
gctgcagagatcttcatttgcaaacatctatgtgaagagactggtggatcctacacagtt
gcgctggatgagtctcatttcaaagagttgttactggaacatgctcccccacctccagca
atagcagaatatgctgcagctaatttgattaagatgggctttccacaaaggggtgctgag
gatcttatatctatttgctcttgtcacaagaagataaagtctggggctgaaggttacata
tgtcctagatgcaaagttaatgtgtgtgagcttccaactgaatgtcgaacttgtggtctt
acactagttagttctccacacttggcaaggtcatatcatcatctcttccctgtagcaccg
ttcgatgaggtcacccctgttccaaatagaatccaaaggggaggacagatctgtttcagc
tgccagcagagcctttttaacccagatggccaatctaacctccatgttcgctgcccaaaa
tgcaaccagcacttctgccttgattgtgatatttacatccacgagagcttgcacaactgc
cctggctgtgagagccaacgcaacatcactttatag
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