Sorghum bicolor (sorghum): 8072302
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Entry
8072302 CDS
T01086
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
8072302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8072302
Enzymes [BR:
sbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
8072302
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
8072302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
8072302
NCBI-ProteinID:
XP_021318911
LinkDB
All DBs
Position
6:complement(55699308..55710155)
Genome browser
AA seq
1218 aa
AA seq
DB search
MAAKVRFSLLVAMFQAMSGDKSSAKKRSRLRAFLDRAYVPSGGRDDYFSALRLVLPGLDR
ERGTYGLKEATLAAVLVDALGIAKDSADAVRLTNWRRGGGFRNAGNFGLVAAEVLQRRQG
LTSGGLTIKEVNDALDRLAATENRSEKASILSNLIKKTNAAEMKWLLMIILKDLKLGISE
KSIFEEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEIGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYTHGMSNIIKENILVDRCI
LDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTE
RHQILQKVVKPLKGHLEILIPTGGLNVRRPSDEPCWSIIAHNVEDVERFFKETIENRDEG
IILKDLDSKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGREVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIISVTSDIRTIKSEVFASPYCLRFPRIQRVRYDKPWHECLDVQAFVDIV
HSSNGTTQRVADDNSLKNDDTNRSRTNKKVEKKKCVSVIPSHLMKTDVSGLKGETLIFAN
MIFYFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAALRQGRIIH
YEWILDCCKEKHLLRLQPRYILFLADFARHKFPEEIDSYADYYYWDIEIADLKQIFSNID
KVAGDSNMVNQYKKKHCIDERFCFFQGCCVYLHNAPLVNADYNVISDLALKRVKQDLTMH
GGQVCSSIAPATHLVVVSVLQAYNFDNLYKSFPPAERRYLHDKRLHVVSNKWLEDSVEKQ
MKLSETAYSLKPDTLEELEIERSEENVQPPDHKLEEHREVERSHAKNVPRKRTRPTSSRT
ARAAPRPVRRMRPRRGNQKAKIGDDVESEESGPSECQDDQNLDTDDTSKIEEGITSKKKG
LPPPASKPARRTRAARGNQHTKIDDGGSEESGPCETGQDDQKLDTDYISNMEVDNSDKDC
GPPPGAQLFTLGEQEAKGVKLNTVEEKPDSPFQRTTAAEAMSSAPGDKIEQMADPLHAML
LDMLPLLGKKGTEDASRAPLPKAEKDPPAGGSSTSNSEILAPDAGTSGVPAPDPNAAPPP
KKKKVSYKDVASELLKDW
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcagcctcctggtggcgatgttccaggccatgtcgggcgac
aagagttcggcgaagaagcgcagccgcctgcgcgcgttcctcgaccgcgcctacgtgccc
agcggcggtagggatgactatttcagcgcgctccgcctcgtgctcccggggctcgaccgc
gagcgcggcacctacgggctcaaggaggccaccctcgctgccgtgcttgtcgacgccctt
ggcatcgccaaggactctgccgacgccgtccggctcaccaactggcgccgcggcgggggt
ttccgcaacgccggcaacttcgggcttgtggccgctgaggtcctgcaacggaggcagggt
ttaacttctggtggattgacgataaaggaggttaacgatgcacttgatcgtctagctgca
actgagaacaggtccgagaaggcctcaatactttctaatctgatcaagaaaaccaatgcc
gctgaaatgaagtggcttctgatgattattcttaaagatttgaaattggggataagtgag
aagagcatatttgaagaatttcatcctgatgcccaagatttgttcaatgtcacctgtgac
ttgaaatttgtctgcgagaagctcaatgatcgaagccagaggcataaacgtcaggatata
gaaattgggaaggctgttaggcctcagctagctatgagagtccgtgatgcttcagctgct
tggaagaagcttcatggaaaacaagtggttgctgagtgcaaattcgatggtgaccgtatt
caaatccacaaaaacggggaagagatccatttcttctctaggagctttcttgatcactct
gaatacacacatgggatgtcaaatattattaaagaaaatatcctggttgacagatgtata
ttggatggagaaatgcttgtctgggacactgtacttaaccgttttgctgaatttggttca
aaccaggaaatagctaaggctgcaagggagggattggagactgatcgacagttgtgctat
gttgcttttgacatcctttatgctggagacaccagtgttatccaccaaagtttgacggag
cggcatcaaattctgcagaaggttgtgaaaccattaaagggtcatcttgagattttaatc
ccaacaggtggtttaaatgttcgtcgcccttcagatgaaccatgctggtcgattattgca
cacaatgttgaagatgttgaaagattcttcaaagagactattgagaacagagatgagggc
attatactgaaggaccttgattccaaatgggaacctggtgaccgaaatggaaagtggctt
aaactaaagcctgattatatacatgcgggtgccgatctggatgttattattataggggga
tactatggatctggacgtcgaggacgagaggttgcacagtttttagttggccttgcagtc
ccttcagatgataatagttatcccaaaaggtttctttcattttgccgtgtcggtactggc
ctctctgatgaagagcgtgatgctcttgtcaccaaactgaagccttatttcaggaaaaac
gagtacccgaaaaaaccaccaaaattttatgaagttacaaataactcaaaggagaggcca
gatgtttggatcgagagccctgataagtcagtcataatatctgtaacaagtgacattcgt
acaatcaagtccgaggtatttgcttctccatactgtttgaggttcccccgtattcagaga
gtgagatatgacaagccatggcatgagtgccttgatgtgcaggcatttgtggacattgtg
cattcaagtaatggtacaacacaaagggtggcagatgataacagcctgaagaatgatgac
acgaatcgctcaagaacaaacaaaaaagtggagaagaagaagtgtgtctcagtcatccct
tcacatctcatgaagactgatgtatcaggtcttaagggagaaaccctgatatttgccaac
atgattttctattttgtcaacattccatcatcttataatctcgaatattttcataaacta
gttgtggaaaatgggggatctttctccatgaatctgaatgactctgttacgcactgcata
gctgcggagaagaaaggtatcaaatatcaggcagctttacggcagggaaggatcattcac
tatgagtggatattagattgttgtaaggaaaaacatcttcttcgtttgcaacctaggtat
atactatttcttgctgattttgccaggcacaaatttcctgaagagattgattcatatgct
gactattactactgggacattgaaattgctgacctcaagcagattttcagcaacatcgac
aaagttgctggtgattcaaacatggttaatcagtacaaaaagaagcattgcatagatgag
agattctgtttcttccagggttgctgtgtctacttgcataatgcacccttagtgaatgcg
gactacaatgtaatatctgatcttgcgctgaagagggtgaagcaggatctaacaatgcat
ggtggtcaagtctgcagcagcattgctccagctactcatttggttgtagtttcggtttta
caggcctataactttgataacctgtacaagagcttccctcctgctgaaagacgttatctg
catgacaaacgattacatgttgtcagtaataagtggttggaagattcagttgagaaacaa
atgaagctctctgaaactgcttacagccttaaaccagatacactagaagaactagaaatt
gaaaggagtgaggaaaatgttcagcctccggatcataagcttgaggaacacagggaagtt
gaaagatctcatgcgaaaaatgtaccaaggaaaaggaccaggccaaccagttcaagaact
gcaagggctgctcctagaccagtccggcgaatgaggcctagaagaggaaaccagaaagca
aaaataggtgatgatgttgaatctgaagaaagtggccccagcgaatgtcaagatgatcaa
aatttggacacagatgatacctctaagattgaagaaggtattaccagcaaaaagaaagga
ctccctccacctgcttctaaaccagcccggagaacaagggctgccagaggaaatcagcat
acaaagatagacgatggcggatctgaagaaagcgggccttgtgaaacagggcaagatgat
cagaagttggacacagattacatctctaatatggaagttgataacagtgataaagactgt
ggaccaccgcctggtgctcagcttttcacattgggggagcaagaggccaaaggtgtcaaa
ttgaacaccgtggaagagaaaccagacagtcctttccaaagaacaactgctgctgaagcg
atgagtagtgcgcctggtgacaagatagaacaaatggctgatccattgcacgccatgctt
ctggatatgttgccactcctgggcaagaaagggacagaagatgcaagtagggcacccttg
ccgaaagctgagaaggatccacctgcaggaggaagttccacatccaattctgagattctg
gcgccagatgctggtacatccggggttccagccccagacccgaatgcagctcctcccccg
aagaagaaaaaagtgagttacaaagatgtcgctagtgaacttctgaaagattggtga
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integrated database retrieval system
