Sorghum bicolor (sorghum): 8074046
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Entry
8074046 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8074046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8074046
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8074046
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 related factors
8074046
Complex B
8074046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8074046
NCBI-ProteinID:
XP_002444969
UniProt:
C5YMI1
LinkDB
All DBs
Position
7:complement(2139012..2143767)
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AA seq
946 aa
AA seq
DB search
MVSGDDNDRDRDRDRDRNRDRDRDRSSSRHHRDRHHERSSSHHRRDDRDFDWDRGRDRRH
RGEKDRDRDEQEREWAPRREERRDRERSRRRDADEEYDDSGRDRKRHRVSSHHHRRDTEP
EAAPATKDQEGGMRDEQQRLDDEMERRRIRVKDWQEKRRKQQGASGAGPEAGGGAVAGKK
WTLEGEDSDEEADGTDLGGSSVMDVDFNNGGNATSGPTDADEEEIDPLDAFMNTMVLPEV
AMLERNAASVDSVPASNAVAKKGLKKGTGRIMQGDDSDSDYEDVGDDVGAGLEDEDDEEF
MKRVKKTKMEKLGVVDHSKIDYQPFQKNFYIEAKDIREMTSEEVAVYRKELELKVHGKDV
PKPIKTWLQSGQTSKLLDTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFL
LPMLRHVKDQPPVAPGDGPVGLIVAPTRELVVQIYLDIKKFSKVLGISCVAVYGGSGVAQ
QISELKRGAEIVVCTPGRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRII
QNIRRDRQTVLFSATFPRQVEMLARKVLIKPVEIQVGGRSVVNKDITQVVEVRPESERFL
RLLELLGKWCDKGKILVFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKS
NICSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEE
ERYAPDLVKALELSEQTVPDDLKALADRFMAKVKQGTERTHGTGYGGSGFKFNEEEDEAR
KFTKKAQAMEYGYEEEKSDSDFDEEEVHKAGDDLDVQAVGEPSTNDEARLHALEALARIQ
RHAVPDHYEAELEINDFPQHARWRITHKDTLGPIQEGGVAITIRGTYIAQGKIVGANERK
LYLFIEGHSESCVKKAKAELKRVLEDCVNQVPNLPKSAPTKKYSVI
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggtctccggcgatgataacgaccgtgaccgggaccgggaccgggaccggaaccgcgac
cgcgaccgcgaccgctcctcctcccgccaccaccgcgacaggcaccacgagcgctcctcc
tcccaccaccgtcgcgatgacagggacttcgattgggaccggggccgggatcgccgccac
aggggggagaaggatagggaccgcgacgagcaggagagggagtgggcgccgcggcgcgag
gagaggagagatagggagaggtcgaggcggcgggatgcggacgaggagtacgacgacagc
ggccgcgaccgcaagcgccaccgcgtatcctcgcaccaccaccgccgggacacagagccg
gaggcggcgcccgctaccaaggatcaagaggggggcatgagggacgagcagcagcggctg
gacgacgagatggagcgccgccgcatccgcgtcaaggactggcaggagaaacgccgcaag
cagcagggtgccagcggggccgggcccgaggcgggcggcggtgccgtggcggggaagaag
tggaccttggagggcgaggactctgacgaggaagcggatggcacagatttgggcggaagc
agtgtcatggatgttgatttcaacaatgggggtaatgctaccagtggccctactgatgcg
gatgaggaagagattgatccacttgacgcattcatgaacaccatggtgctgccggaggtt
gcaatgctggagcggaatgcagcatcagtggacagtgtaccagcttccaatgcagttgct
aagaaagggttgaagaaggggactgggagaatcatgcaaggggatgactcagactcagat
tatgaagatgtcggggatgatgttggtgctggattggaggacgaggatgacgaggagttc
atgaagcgtgtcaagaagacaaagatggagaagctgggggttgtggaccattccaagatt
gattaccaaccgttccagaagaatttctacatcgaggcaaaggacatcagggagatgaca
tccgaggaagtggccgtgtacaggaaggaattggagctcaaggtgcatgggaaagatgtg
cccaagccaattaagacatggttacagagtgggcagactagcaagctccttgacaccatc
aagaagcttggttttgagaaacccatgcctatacaggcgcaagcgttgccggtcatcatg
agtggccgtgattgtattggtgttgcaaaaactggatctggcaaaacacttgcgtttctc
cttccgatgctcaggcatgtcaaagaccagccacctgttgctcctggagatggtcctgtt
gggctcattgtggctcctacaagggagcttgtggtgcagatatacttggacattaagaag
ttctctaaggtgcttggcattagttgtgttgctgtctatggaggttcaggggttgcccag
cagatcagtgaactgaaacgaggtgctgaaattgtcgtttgcacaccaggaaggatgatc
gatatcctctgtactagcaatgggaaaatcactaaccttcggagagtgacattcttggtg
atggatgaagctgataggatgttcgacatgggttttgagcctcagattactaggataatt
caaaacatccggcgagatagacaaacggtgcttttctcagccacttttccacggcaggta
gagatgctggcgcgcaaggtgctgatcaagcccgttgagattcaggtgggtgggaggagt
gtcgtgaacaaagacatcacacaagtagtcgaggtgcggccagaaagtgagaggttctta
aggctgttagagttgcttgggaagtggtgtgataaggggaagattcttgtgtttgtccac
actcaagataaatgtgattctctgcttaaaaacttgttccagcatggatatcagtgcttg
tctctacatggtggtaaagatcaagccgatcgtgaatcaacagttgctgatttcaagagt
aatatctgcagcttgctgattgctactagtgttgctgctaggggtttagatgtgaaagaa
cttgagttggttgtcaattacgatgtccctaaccactatgaggactatgttcatcgtgtt
gggcgaacaggccgtgctggtaggaagggctctgctgtgacttttatttctgaggaagag
gagcgatatgcgccagatcttgtgaaggcactggagctctctgaacagactgttccagat
gacctgaaagccttagctgatcggtttatggcaaaggtgaagcagggaacagagcggacc
catggtactggttatggtggaagcggtttcaagttcaatgaggaagaggatgaagcgcgg
aagttcacaaagaaagctcaggcaatggaatatggatatgaggaggaaaagtcagattca
gattttgacgaggaagaggtacataaggcaggagatgaccttgatgtgcaggcggtgggt
gaaccgagcacaaatgatgaagctaggcttcatgctcttgaggctttggcacggatacag
cgccatgcggttcctgaccactacgaggctgagcttgagattaatgatttcccacagcat
gctcgctggagaatcactcacaaagacacattaggtcctattcaggaaggtggtgttgct
atcactataaggggaacatatattgctcaaggaaaaattgttggtgctaatgagcgcaaa
ctgtacctgtttatcgagggccactcagagtcttgtgtgaagaaggcaaaagcggagttg
aaacgtgtccttgaggattgtgtcaaccaggttcccaatctacctaaatctgctccaact
aaaaaatactcagttatttga
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