Sorghum bicolor (sorghum): 8078017
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Entry
8078017 CDS
T01086
Name
(RefSeq) THO complex subunit 1 isoform X2
KO
K12878
THO complex subunit 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8078017
09122 Translation
03013 Nucleocytoplasmic transport
8078017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8078017
03041 Spliceosome [BR:
sbi03041
]
8078017
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
8078017
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
8078017
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8078017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
8078017
NCBI-ProteinID:
XP_002468664
UniProt:
C5WMN6
LinkDB
All DBs
Position
1:complement(79968375..79976387)
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AA seq
637 aa
AA seq
DB search
MAEPSPPPASNAGLRILLSKDRPAPSPPPTAAVSSHADRDRIIGVFRSALSRNEPPETFS
LQTVQEAIKPQKETVLVLEENQSLENALRTLLQELVSSAVQSGKKIMQYGNSLDSGESNC
PITRLLDIVLYLCERGHVEGGMVFQLLEDLTEMSTIKDCKDIFGYIESQQDVLGKQELFG
RGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNVTKYE
KDAMDGISVDFNFYKTLWSLQEHFSNPALTNTNPAKWQKFSSNLAVVLSTFEAQPLSDDD
GKLNNLNEEEDAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLIFFDYLKAPGKNDKEGP
TGSMKEEIKSCEEHVKKLLEIIPPKGKEFLKSIEHILEREKNWVWWKRDGCLAFEKPPFE
KKPGQAGGRKRKPRWRLGNKELSQLWKWAEQNPNVLTDPDRVRMPSITEYWKPLAEDMDP
SAGIEEEYHHKSNRVYCWKGLRFSARQDLDGFARFSDYGIEGVVPSELLPPEVNARFSSK
PAEKVKRTRREDSKGMSAQPKEQQVAATPETDGGGSGGDPEEGAAPMDSDNGGVEDSQKR
SPGEVSGPESGQCEPEADADDNVKTETTSRDARARVV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccctcgccgccgccggcgtcgaacgctggcctccgtatcctcctgtcgaag
gaccgaccggctccttccccgccacccaccgccgccgtttccagccacgccgaccgcgac
cgcatcatcggagttttccggagcgcgttgtctaggaatgaacccccagaaacattttct
cttcagacagttcaggaagcaattaaacctcagaaggaaaccgtgttggttctagaggag
aaccaatccttggaaaatgctcttcgaacattgctgcaggagcttgtgtcatctgcagtc
caatcgggtaaaaagatcatgcaatatgggaattccttggatagtggagaaagtaactgc
ccaataactcgccttcttgatattgtgctttatctttgtgaaagagggcatgttgagggt
ggtatggtattccagctgttggaagacctaactgaaatgtcaacaatcaaagactgcaaa
gatatctttgggtatattgagagtcaacaagatgtactgggaaagcaagaactttttgga
cgtgggaaactagttatgctaaggacttgcaaccaacttcttcgcagactatcgaaggca
aatgatgtggtgttctgcgggcgcattattatgtttctagcacattttttcccattatcc
gagcgttcagctctcaacattaaaggagttttcaacacgtcaaatgtaaccaagtatgaa
aaggatgctatggatggaatctctgttgatttcaacttctacaagaccctctggagtcta
caggaacatttcagtaacccagctttgactaatacaaatccagcaaaatggcaaaagttc
tcttccaatttggcggttgtgttgagcacatttgaagctcaacctcttagcgacgatgat
ggaaaacttaacaatctcaacgaggaggaagacgccgctttcaatattaagtacctgact
agcagtaaattaatgggtttagagttgaaggacccaagttttcgacgccacatccttgtt
cagtgccttatattttttgactatctcaaggcgcctggaaaaaatgacaaagaaggtcca
acagggagcatgaaagaggaaatcaaatcttgtgaagagcatgttaagaagcttctggaa
attattcccccaaaaggaaaggaatttcttaaaagcattgaacatattcttgagcgggag
aaaaattgggtttggtggaagcgagatgggtgtcttgcatttgaaaaaccaccctttgag
aagaaaccaggtcaggctggaggtagaaaacggaagccaaggtggagactgggaaacaaa
gagctcagccaactttggaaatgggcagaacaaaaccctaatgttttgactgatcctgac
cgtgtccgcatgccatcaattacggaatattggaaaccacttgcagaagatatggatcca
tctgctggaattgaagaggagtaccaccacaaaagtaatcgggtgtactgttggaaagga
ctacggttttcggccaggcaagacttggatggttttgctcggttttcagactacgggatc
gaaggagttgtaccttcagaactccttccacctgaagtaaatgctaggttttcttctaag
cctgccgaaaaggttaagcggacgagaagggaagattcaaaaggcatgtcagctcaaccc
aaagagcagcaggttgctgcgacaccagaaaccgatggcggtggcagtggtggcgatcca
gaagaaggggcggcaccaatggattccgacaacggcggggtggaggatagtcagaaacgg
agcccaggggaggtctctggccctgaaagcgggcagtgcgagcctgaggcggatgccgat
gataacgtgaagactgaaaccaccagtagggatgctcgtgctagagtagtataa
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