Sorghum bicolor (sorghum): 8080853
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Entry
8080853 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8080853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8080853
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8080853
Spliceosome [BR:
sbi03041
]
Complex A
U2 snRNP components
U2 related factors
8080853
Complex B
8080853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
8080853
NCBI-ProteinID:
XP_002445101
UniProt:
C5YHD5
LinkDB
All DBs
Position
7:complement(5099847..5104292)
Genome browser
AA seq
1062 aa
AA seq
DB search
MGSGDDERSTSKHHHRDKDKDRDRSSSRHHRDKERDRDRERERSSSRHHRDDGDRDRDRD
RHHRDKERDREERKEREREERKAREREEREREKEKEKEKERARRREERDREERERSRRRG
DADGEEDDDRDRKRRRRSSHHHHHHRDPEPASREEEEVDAEEAERRRQRKKEEDMEAEQQ
RLDDEMERRRRRVKEWQEKRREQQQQQDGGGAGGASAAAAAEADGVKVAGKKWTLDGEES
DEEGDKEDGKKDEENGGAGDMDVDLPNGDGDANGGAGMEEDEIDPLDAFMNSMVLPEVAK
LESAAAAMDTTAPGAGADDKNGKSSKDVVSNGDKKGSRKAIGRIMQGDDSESDYDDADDD
GAGEDDEDDEEFIKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDISKMTSEEVVEYR
KHLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQTQALPIIMSGRDCIGI
AKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGIN
CVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMF
DMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQ
LVEVRPDTERFFRLLELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQ
TDRESTIADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGR
KGFAVTFISEEEERYAPDLVKALELSEQAVPQDLKALADRFMAKVKQGTEQAHGTGYGGS
GFKFNEEEDEARKTAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIANAHAAAA
LVANKAANNVNQQIPGSATVPLIPLLAATNQQNDEATARALQAAMNLQQNLARIQAHAVP
EHYEAELEINDFPQNARWRITHKETLAPIQDWTGAAITTRGTYIPQGKIVGANERKLYLF
IEGPTESSVKKAKAELKRVLEDCANQALNLPGSAQTGKYSVI
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggctccggcgacgacgagcgctccacctcaaagcaccaccaccgcgacaaggacaag
gaccgcgaccgctcctcgtctcgccaccaccgcgacaaggagcgcgaccgcgaccgcgag
cgcgagcgctcctcctcgcgccaccaccgcgacgacggcgaccgggaccgggaccgggac
cgccaccaccgcgacaaggagcgggatcgagaggagcggaaggagcgggagcgggaggag
cggaaggcgcgggaacgggaggagcgggagagggagaaggagaaggagaaagagaaggag
cgggcgcggcggcgcgaggagagggaccgcgaggagcgggagaggtcgaggcggcgcggg
gatgcggatggcgaggaggacgacgaccgggaccgcaagcgccgccgccggtcctcgcac
caccaccaccaccaccgggacccggagccggcgtcccgggaggaggaggaggtggacgcc
gaggaggcggagcgccggcgccagcggaagaaagaggaggacatggaggccgagcagcag
cgcctcgacgacgagatggagcgccggcgccgccgcgtcaaggagtggcaggagaagcgc
cgcgagcagcagcagcagcaagatggcggtggagctggtggcgcttctgctgcagcggcg
gctgaggctgatggcgtcaaggtggcggggaagaagtggaccttggatggtgaggagtct
gatgaggaaggtgacaaggaggatggcaagaaggatgaggagaatggcggcgctggtgac
atggatgtggatttgcccaatggggatggcgatgccaacggtggtgctgggatggaggag
gacgaaattgatccgcttgatgccttcatgaactctatggtgttgccagaggttgccaaa
ctggagagtgctgcagcagcaatggacaccaccgcgcctggtgcaggtgcagatgacaag
aatggtaagagctcaaaggatgtcgttagtaatggggataagaaagggtcaaggaaggcg
atagggagaattatgcaaggggatgattcagaatcagactatgatgacgctgatgatgat
ggggctggagaggatgatgaggatgatgaggaattcataaagcgcgtcaagaagacgaag
gccgagaagttggcaattgttgaccattctaagattgactaccaaccattccggaagaat
ttctatattgaggtgaaggacatctccaagatgacatccgaggaagtggtagagtaccgg
aagcacttggagctcaaggtgcatgggaaagacgtgcccaagccaataaagacatgggtg
cagagtgggctgacaagcaagctccttgacaccatcaagaagcttggttttgagaaaccg
atgcctatacagacacaggctttaccgatcataatgagtgggcgtgattgtataggcatc
gcaaaaactggatctggcaagactctagcatttgtcctcccaatgctgaggcatgttaaa
gatcagccccctgttgtccctggagatggccctattggtctcattatggctcctactaga
gagcttgtggtgcagatacattcagacattaaaaagttctctaaggtgcttggcatcaac
tgtgttgcaatctatggaggttcgggagttgcgcagcagatcagtgaattgaagaggggt
gccgaaattgttgtttgcacgccgggaaggatgattgatatcctttgcactagcagtgga
aaaataactaaccttaggagagtgactttcttggtgatggatgaagctgataggatgttt
gacatgggttttgagcctcagattactcgtatagtccagaatacccggccagataggcag
acagtacttttctctgccacatttccacgtcaagtggagatactggcacgcaaggtgctt
actaagcctgttgaaattcaagtgggtgggaggagtgtcgtgaacaaagatatcacacaa
ctggttgaggtgcggccagacactgagaggttcttcaggctgttagagttgcttggtgaa
tggtatgttaaggggaaaatccttgtttttgttcactcacaagataaatgtgattctcta
ctcaaagacttgttccagcatgggtatccatgtctgtcccttcatggcggcaaagaccag
actgaccgtgaatcaactattgctgatttcaagagcaacgtctgcagcttgctgattgct
actagcgttgctgctagaggtttagatgtaaaagaacttgaactggttgtcaattatgat
gtccctaaccattatgaggactatgtccatcgggttggtagaacagggcgtgctggtaga
aagggctttgccgtgacttttatttctgaggaggaggagcgatatgcaccagaccttgtt
aaggctctggaactctctgagcaggctgttccacaggacctaaaagccctggctgataga
tttatggctaaggtgaaacagggaacagagcaggcccatggtacaggctatggtggtagt
ggtttcaagtttaatgaggaagaggatgaagcacggaagactgcaaagaaggctcaggca
agggaatatggttatgaagaggacaagtcagattcagattctgatgaggaagggggagtg
cgtaaggcaggaggtgacctagcagcacaagctattgccaatgctcatgcagcagctgct
ttggttgcaaacaaggctgctaataatgttaatcagcaaataccaggatctgcgacagtc
cccttgattcctttactcgcagcaacaaaccaacaaaatgatgaggccactgctcgggca
cttcaggctgcaatgaacttacaacaaaatctggctaggatacaggcccatgcggttcca
gaacactatgaggctgaacttgagattaatgatttcccacagaatgcccgttggaggatc
actcacaaagagacactggcccctattcaggactggactggtgctgctatcactacaagg
ggaacatatattcctcaaggaaaaattgttggtgcaaatgagcgcaagctctacctgttt
attgagggcccgacggagtcgtctgtgaagaaggcaaaagcagaattgaaacgtgtcctt
gaggattgtgccaaccaggcacttaatcttcctggatctgctcaaactggaaaatattct
gttatttga
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