Syngnathoides biaculeatus (alligator pipefish): 133497808
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Entry
133497808 CDS
T09681
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133497808 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbia03041
]
133497808 (dhx38)
Enzymes [BR:
sbia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133497808 (dhx38)
Spliceosome [BR:
sbia03041
]
Complex C
Other components
Step II factors
133497808 (dhx38)
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Microtub_bd
AAA_16
Flavi_DEAD
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
133497808
NCBI-ProteinID:
XP_061669968
LinkDB
All DBs
Position
3:7336003..7362893
Genome browser
AA seq
1242 aa
AA seq
DB search
MDDDDSMHRLEGTDPKVQVGGLIVKKKIAPAEHHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQNEVGGEDEGRKKSRVSSYKDWEESKSDSGSDDDDDDEKNGQDKKENRKYRTSGSET
PSSPGGVSEEFRRRHEQREKDRREQGVYVSSKDDRNREKDKGRDRRSERDTREGSSSSRS
DRSHRSERSERSQKDGWSDRISRGSRRDEPQTPQQRPRDGSTPSRSNWEEDDSGYATSRH
SQWESPSPTPSARESERSRHSGRESERRDRSVRGRYTDDTPLPTPSYKYNEWANDRKHLG
STPRLSQGKGKKDGGTGISFDNEDEKEQWEEDQKQADRDWYMMDEGYDEFHNPFTSTSDE
YVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNATKVH
LLVHNLVPPFLDGRIVFTKQPEPIIPVKDATSDMAIISRKGSQLVRKHREQKERKKAQHK
HWELAGTKLGDIMGIKKKEDDACGGQEVGEDGKVDYRAEQKFADHMKEKSQASSEFAKKK
SILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTSYGMVGCT
QPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTCEKTMIKYMTDGILLRESLRESDL
DHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKFAAFFGNVPIFH
IPGRTFPVDVLFSKTPQEDYVEAAVKQALQIHLSGLVGDILIFMPGQEDIEVTSDQIVER
LEDLDNAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVDA
GYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRLYTQSAYKNEMLTTTI
PEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGSLTPTG
RMMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREEESDQVREKFSV
PESDHLTYLNVYTQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIMVQQRMNLMSSG
SDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIIYHELV
MTTKEYMQCVTAADGEWLAELGPMFYSIKHAGRSRQENRRRAKEEINNMEEEMALAEEQL
RSRREEHERKNTGNVKSLRICTPGRREEAPMTPRRTPSRFGL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgactccatgcatagactggaggggactgaccccaaagtccaagttgga
ggactgatagttaagaagaagatcgcccctgcagaacatcacgtttttcgggctcctacc
ccgcgcacctctctcctgggcttggatctgctggcggctcagaaaaggaaagaacgagag
agtaaagaacagaatgaagtcggtggcgaggacgaaggcagaaagaaatccagggtttcg
tcgtacaaggactgggaggaaagcaaaagtgattctggttctgacgatgatgatgatgat
gaaaagaatgggcaggataaaaaggagaaccggaagtaccgtacgagtggctcagagaca
ccttccagtcccggaggggtcagcgaagagttccgtcgccgacacgagcagagagaaaaa
gacagacgggagcagggcgtctacgtctcctccaaagatgacaggaacagagagaaagac
aaggggagagatcggcggagtgaaagagatacccgagagggcagctccagcagccgctcg
gatcgttcgcaccgcagcgagaggagtgagcgctcacagaaagatggctggtcggatcgc
atcagccgaggcagcaggcgggatgaaccgcaaacgccacagcagcgccccagggatggt
tctacaccttcgcgctccaactgggaggaagacgacagcggttacgctacttcacggcat
tctcagtgggagtctccctccccgactccttccgcaagggagtcggagcggagtcgccac
tcgggtcgagagagcgagagaagagacaggtcagtgagagggcgctacaccgacgacaca
cccctgcccaccccatcctacaagtacaacgagtgggccaatgacagaaagcatttaggt
tccacacctcgtttgtcccaaggaaaaggtaaaaaagacggtgggactggaatctcattt
gacaatgaggatgagaaagagcagtgggaagaagatcagaagcaagccgacagagactgg
tacatgatggacgaaggatacgatgagttccacaaccccttcacatccacgtctgatgaa
tacgtcaagaagagagagcaaatcctgcagaagcagacccagaaacgaatctccgcccag
aaacgacaaatcaacgaggacaatgagcgttgggagaccaaccgtatgctgaccagcggt
gtggtgcagaggttggaggtggatgaagactttgaggaggacaatgctacaaaggttcac
ctgctggttcacaatttggtccctcccttcctggatggaagaatagtgttcactaaacag
ccagagcccatcatccccgtgaaagacgcaacctctgacatggccatcatctcacgcaag
ggcagccagcttgttcgtaaacaccgcgagcagaaagagcgcaagaaggcacagcacaaa
cattgggaactggcaggcactaagctgggagacatcatgggcatcaagaagaaagaagac
gacgcttgtggaggccaagaggtcggcgaggacggcaaggtagactacagagcagagcag
aagttcgcagatcacatgaaagagaagagccaggccagcagtgaatttgccaagaaaaaa
agcattctggagcagcgacagtacttgcctatttttgctgtgaggcagcagcttcttaac
atcataagggacaacagcatcgtgatcgtcgttggcgaaacgggcagcgggaaaaccacc
cagctgacccagtacctgcacgaggacggctacaccagctacggcatggtggggtgcact
cagccccgcagagtggccgccatgagtgttgccaagagagtgagtgaggagattggcacc
aacctaggagaggaggtcggctacgcaatccgtttcgaagactgcacgtgcgagaagacg
atgatcaagtacatgacggacggcatcctgctcagagagtccctgagggagtcggacctg
gaccactacagcgccgtcatcatggatgaggctcacgagcgttcgttgaacaccgacgtg
ctgttcggtctgctgcgcgaggttgtatctcgacgcacagacttgaaactcattgttact
tcggcgacaatggactcggacaaatttgccgcatttttcggcaatgtgcccatattccac
attccgggcagaacatttccagtggacgtcttgtttagcaagactcctcaggaggactac
gtggaggcagcagtgaaacaggccttgcagatccacctcagtggattggtcggcgacatt
ctcatcttcatgccggggcaggaggatattgaggtgacatcagatcagattgtggaacga
ctggaggatttggataacgctcctgctctggctgtgctgcccatttactctcagctgccc
tctgatttacaggccaaaatcttccagaaggccccagacggtgttcgtaaatgtattgtt
gcaacaaacatcgcagagacttccctcactgtggacggtatcatgtttgttgtggacgct
ggatactgcaaacttaaggttttcaaccctcgcattggaatggatgcgctccaagtgtat
cccatcagccaagccaacgcgaaccagcgtgctgggagagcaggtcgaacaggaccaggg
cagtgttacaggctctacactcagagcgcctataagaacgagatgctgaccaccaccata
ccggaaattcagaggaccaacctggccaacgtggtcctgctactgaagtcgttgggcgtt
caggatttgctcctcttccacttcatggacccgccgcccgaagacaacatgctcaactcc
atgtaccagctttggatcctgggagctctcgacaacaccggttctttgacgccgacgggc
cgcatgatggtggagttccccctggacccggcgctgtccaagatgctgatcgtgtcgtgc
gacatgggctgcagcgccgacatcctcatcatcgtttccatgttgtccgtgccggccatc
ttttacagacctaagggccgtgaggaagagagcgaccaggtcagggagaagttctccgtg
ccagagagtgaccacctgacgtacctgaacgtctacacgcagtggaaaaacaacaattat
tccagcatctggtgcaacgaccacttcattcacaccaaggccatgcgcaaggtgcgggag
gtgcgctcccagttaaaagacatcatggtgcagcaaaggatgaacttgatgtcgtccggc
tcggactgggacatcatcaggaagtgcatctgtgccgcttacttccaccaggccgccaag
ctgaagggcattggcgaatacgtgaacgtgaggacgggcatgccgtgtcacctccacccg
accagctccctgttcggtatgggctacacccccgactacatcatctaccacgagctcgtc
atgacgaccaaggagtacatgcagtgtgtcacggcggcggacggcgagtggctggcggaa
ctggggcccatgttttatagcatcaaacacgcggggagaagcagacaggaaaaccgtcgc
cgcgccaaggaggaaataaacaacatggaggaggagatggccttggccgaggagcagctc
cgaagccgtcgcgaggagcacgagaggaagaacacgggcaacgtcaagtcgttgagaatc
tgcacaccaggaagacgggaagaggcccccatgacacctcgacgtaccccttcccgattt
ggactgtaa
DBGET
integrated database retrieval system
