Syngnathoides biaculeatus (alligator pipefish): 133502140
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Entry
133502140 CDS
T09681
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133502140 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133502140 (cnot4a)
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133502140 (cnot4a)
04121 Ubiquitin system [BR:
sbia04121
]
133502140 (cnot4a)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133502140 (cnot4a)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133502140 (cnot4a)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133502140 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133502140 (cnot4a)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133502140 (cnot4a)
BRITE hierarchy
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
DZR_2
zf-CCCH_2
zf-C3HC4
TFIIA
Torus
Rtf2
Motif
Other DBs
NCBI-GeneID:
133502140
NCBI-ProteinID:
XP_061678564
LinkDB
All DBs
Position
6:27837896..27857662
Genome browser
AA seq
812 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADLEVLKRPEYFGRFGKIHKVVINNSTSYAGSQVQGPSASAYVTYVRSEDALRAIQCVNN
VVVDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKDEMQAGKHQEYEQ
KLLQDLYKINPSFLQPPVCGAEKSKSKSGLTQRQNSSNGKDGWPTLSGHSKLANGLSEDR
KSPPLLDYLDQEGLASDCLDTDIGPGQCTAMSPFSSNCDSNSSPSDKASESIGMVNGDTF
QQMPTSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPT
GLPPFPSDPRASDWPMTPEPQSLFTSETIPVSSSTDWQAAFGFGSSSKQQEDDLGFDPFD
VTRKALADLIEKELSVQDQSSASAAPPAQGGNHAPGLPPPNGNAGNSHHLHGGLPRIPQL
HHHRAIYNSFSFPGGQSSQASQQQQQQQQQQQQQQQAARHPWMGIPSRNNLTHLNHSATA
ASHSNFLDLNMPHQHSTGLGGIPISENSSSIEGLNVKEWQDGLRALLPNININFGGLPNS
SSSSSSSSSNSVNHIGGPAGISHSLSWDSTASWMDPAIITGIPASAGASLDCLHDDNPPH
WLKSLQALTEMDGPASSAAAPAPQPLHSGILDGHLPLHHRAAAAAGWAPYLPPATANPAS
QFHSPPPGFQTAFRPQGQPATELLQSATVDRH
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatagccctgaaatgaaggacgaccccatggagtgccccctatgcatggagccg
ctggagattgacgacgtcaacttcttcccctgcacctgcggctaccagatatgccgcttc
tgctggcaccgcatccgcacagacgagaacggcctttgcccggcgtgcagaaagccgtac
cccgaggaccccgctgtgtacaagcctctgtcacaggaggagatccagaggataaagaac
gaaaagaagcagaaacagaacgagaaaaagcagaaggtgacggagaaccgcaagcacctg
gccagcgtccgagtggtccagagaaacctggtgttcgtcgtggggctctcgcagcgcctc
gctgacctggaggtcctaaaacgaccagaatattttgggagattcgggaagatccataaa
gtagttatcaacaatagtacgtcttatgcagggtcacaggtccaggggccgagtgccagt
gcgtacgttacctatgttcgctcagaagacgctctcagagcaatacagtgcgttaacaac
gtggtggtcgacggcagaacactcaaggcgtctttaggcacaacaaagtactgcagttac
ttcctcaaaagtatgcagtgtcctaaacctgattgtatgtatctacatgagttaggagat
gaagcagctagctttactaaagatgaaatgcaggcagggaaacatcaggagtatgagcaa
aaactcctgcaagacctgtataaaataaaccctagctttctacaacctccagtatgtgga
gcagaaaagtcaaaaagtaaatcgggcttaacgcaaagacaaaacagtagcaatggtaaa
gatgggtggcccacgttatcagggcacagcaaactagccaatggcctttcagaggaccgc
aagtccccgccgctgctagactatctagaccaagagggactcgcctcagattgtctcgat
acagacatcggtcctggccagtgtactgccatgtcccctttctcatcaaactgtgacagc
aacagcagccctagtgacaaagcttcagagtctattggtatggtgaacggcgatactttc
caacagatgcccaccagtgactccccatcccctccgccgggtttgaccaagcccagcctg
gtggtgcccatcagcgtgtccgacctcacagcccgctcgcctttcgagggcgcggcggcc
gagtcgcaatcactcttttcggacaacagcaatttcagacaccccaacccgctccccacc
ggtctgcccccatttcccagcgacccccgggcctccgattggcccatgactcctgaaccg
cagagcctattcacgtcagaaacgataccagtgtcgtcgtccacggactggcaagcggcc
ttcggcttcggctcgtccagcaaacagcaggaggacgacctgggcttcgacccgttcgac
gtcacccgcaaagcgctggctgacctcatcgagaaggagctgtcggtacaggatcagagc
tcggcctccgcggcgcctcccgcccaggggggcaatcacgcacccggtctcccgcccccc
aacggcaacgccggcaactctcaccatttacacggcgggctaccccgcatcccccagcta
caccaccacagggccatctacaattccttcagtttccccggcggtcagagcagtcaagcc
agtcaacaacaacaacaacaacagcagcagcaacagcaacagcagcaagctgccagacac
ccctggatgggcatcccttcgcggaataacctcacacacttgaaccactcagccactgct
gcctcacacagtaatttcctggacctgaatatgcctcatcagcacagcacaggtctggga
gggatccccatctcagaaaacagcagttctatagaaggcctaaatgtgaaagagtggcaa
gacggtctcagagcgctcctgcccaacatcaacatcaacttcgggggccttccaaactcc
tcttcctcctcgtcctcttcatcctcaaacagtgttaaccacatcggcgggccggcaggc
atttcgcacagcctgagctgggacagcacagcgagctggatggaccctgcgatcatcaca
ggcatcccggcctcagcgggcgccagtttagactgtctccacgacgacaaccccccacac
tggctcaagtccctgcaggcgctcacagagatggacggtccggccagttcggcggcggcg
cccgccccccagcccctccacagcggcatcctggacggccacctccctctccaccacaga
gccgccgccgccgccggctgggccccttacctgccccccgccacagccaaccccgccagc
cagttccactcccccccgccaggtttccagaccgccttcagaccccagggacagcccgcc
acagagttgctacagagtgccaccgtggaccgccactga
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