Syngnathoides biaculeatus (alligator pipefish): 133511020
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Entry
133511020 CDS
T09681
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03013
Nucleocytoplasmic transport
sbia03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133511020 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
133511020 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbia03019
]
133511020 (thoc1)
03041 Spliceosome [BR:
sbia03041
]
133511020 (thoc1)
Messenger RNA biogenesis [BR:
sbia03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133511020 (thoc1)
Spliceosome [BR:
sbia03041
]
Complex C
Other components
EJC/TREX
133511020 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133511020 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
133511020
NCBI-ProteinID:
XP_061695576
LinkDB
All DBs
Position
13:4143373..4151603
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AA seq
655 aa
AA seq
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MSPPLFDFVEAKDKLTESAKRSLGDKSSKAIINAFHHIPGNETEKKTTLDQAFRGVLGEQ
IVAQASSCEEYLSLIYMSIDAVTEGICSATTPFVLLGDVLDSLPLDQCDNIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEDESTFGLKHTEEKEDNMEVEEGEMGEDEAPASCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKVSWVTFLKYSDETLAVFKSFKLDDNQASKRKLEELRASGGGEHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCLLNDDQAAWIEETTKL
VYQLLREIPPDGDKFATMVERILNTEENWIAWKNEGCPSFVKERAADDKPKRPARKRAAP
EDFLGKGPDRKIFMGNDELTRLWNLNLDNTEACKSDSREFMPSLDEFFAEAIEQADPVNM
VEEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFNSLADYLDSMVSKLAKELPKDIPS
EEIKTGEEDDDENGDNLLKDGNDSPSMPSKMVSNQQMDDVAAKLGGRWKSLASHLEMRAA
ELREIEAESEDADIRAKLLLVTWQDREGAQATVESLVAALNAAGFAKMADELSEA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccacccttgtttgattttgtcgaagctaaagacaagcttacggaatccgccaag
cgatcgctgggcgacaaaagcagcaaagcaataataaacgctttccatcacattcccggg
aatgagaccgaaaagaagacgacactggaccaagcttttcggggggttctcggggagcag
atcgtggcgcaggcgtcgagctgtgaggagtacctgtctcttatctacatgagcatagat
gcagtcactgaaggcatctgctcggccacgacgcctttcgtgctgctgggggacgtgctg
gacagtcttcctctggaccagtgcgacaacatcttctccttcgtggaggagaacgtgtcc
acatggaaatctaactcattctacaccgctggcaagaactacctcttgagaatgtgtaat
gatcttctacggcgcctgtccaagtctcaaaacacggttttctgcggacggattcagctt
ttcttggctcgtctctttccgctgtcggagaagtccggtctgaatctccagagtcagttc
aacctggacaacatcacagtgttcaacaaaaatgaagatgaaagcactttcggactcaag
cacacggaagagaaggaagacaacatggaggtggaggaaggggagatgggggaagacgaa
gcgcccgcgtcgtgctccatccccatcgactacaacctgtacagaaagttctggacgctg
caggactacttcaggaacccggtccagtgctacgacaaagtgtcctgggtgaccttcctc
aagtactcggacgagacgctggccgtcttcaagagcttcaagctggacgacaaccaggcc
tccaagaggaagctggaggaactgcgggcgtccggcgggggggagcacgtctacttcgcc
aaattcctcaccagcgagaagctgatggacttgcagctgagcgacagcaacttccgccgt
cacatcctgctgcagtacttgatcctcttccagtacctcaaaggacaagtcaagttcaaa
agctccagctgcttgctgaacgacgaccaggccgcgtggatcgaggaaaccaccaagctg
gtttaccagcttctccgagagattcctcccgacggggacaagttcgccaccatggtggag
cgcatcctcaacactgaggaaaactggatcgcttggaaaaacgagggctgtccgagcttc
gtgaaagagcgggcggccgacgataaacccaagcggcccgccaggaagcgagcggctccc
gaagacttcctgggaaaagggccggacagaaagatcttcatgggaaatgacgagctgact
cgcctttggaacttaaacctggacaacacggaagcctgcaagtcagacagcagggagttc
atgccctcgctggacgaattcttcgccgaggccatagagcaggccgaccccgtcaacatg
gtggaggaagagtacaaagtcgtccggaacccaaactacggctggcgggcgttgcgactg
ctctccagaaggagcccgcacttctttcagcccaccaaccagaagttcaacagcctggcc
gactacctggacagcatggtcagcaagctggccaaggagctgcccaaggacatcccgtcg
gaggagatcaagacgggcgaggaggacgacgacgaaaacggagacaatctgctcaaagac
ggcaacgacagcccgagcatgccgagcaagatggtgagcaaccagcagatggacgacgtg
gcggccaagctgggcggccgctggaagtcgctggcctcgcacttggagatgcgggcggcc
gagctgcgcgagatcgaggccgagagcgaggacgccgacatccgggccaagctcctgctg
gtcacctggcaggaccgggaaggggcgcaggccaccgtggagagcctggtggcggccctc
aacgccgccggcttcgccaaaatggcggacgaactcagcgaagcttga
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