Syngnathoides biaculeatus (alligator pipefish): 133511124
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Entry
133511124 CDS
T09681
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03030
DNA replication
sbia03410
Base excision repair
sbia03420
Nucleotide excision repair
sbia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133511124 (lig1)
03410 Base excision repair
133511124 (lig1)
03420 Nucleotide excision repair
133511124 (lig1)
03430 Mismatch repair
133511124 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbia03032
]
133511124 (lig1)
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133511124 (lig1)
Enzymes [BR:
sbia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133511124 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
133511124 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
133511124 (lig1)
DNA replication proteins [BR:
sbia03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
133511124 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
133511124 (lig1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
133511124 (lig1)
NER (nucleotide excision repair)
Other NER factors
133511124 (lig1)
MMR (mismatch excision repair)
Other MMR factors
133511124 (lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
133511124
NCBI-ProteinID:
XP_061695753
LinkDB
All DBs
Position
13:15613745..15697642
Genome browser
AA seq
989 aa
AA seq
DB search
MQRSIASFFQPKTKDKDVQKKANDKQVIKPVKSPLKAQNGVQEEDSPVKKVPKRTRRILD
SDDDEQEVNPTKQQVKEDLFKAVPALMSPPPPPRAPATPATPASPASSMSPDTPNSVSSS
GGISKRKTARKMFPKRKLADSLAGSDGQPQEDATNTQTVPTAEGQPSKRARVEDGDDDNN
TERKMFLKRKLADSLAGSDGQPQEDATNTQTVPTAEGQPTKRACVEDSDDDNNTDKVTKQ
ERDDEAEAKRQVRMPDKNQEEAEDVEKKLEDGEEEKRDVKEPKEKAKKAPVSSFFAPRKA
SVKTVKKRDGEKKNKTTTSPSVEDSKDAQSESLVTETDYNPSRTNYHPLEHAFWKEGQKV
PYLAVARTFEKIEEDSGRLRNIETLANLFRSVLLLSPDDLLCCVYLCLNQLGPAYLGLEL
GVGETVLMKAVAQATGRQLDKIKAEAQERGDLGLVAASSRSNQRTMFRPASLTVGGVFKK
LKEIAGMSGHSAMNKKIDIIKGLFVACRFSEARYIVRSLVGKLRIGLAEQSVLSALSQAV
CLTTPEKGNSPAVIDAGKGMTTESRRAWIEEKSLILKQTYCEMPNYDILIPVLLKEGIDQ
LPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVQIF
SRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVD
ASDIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRESFAEVEGEFLFARYLDSDNTETI
AEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLG
KGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHHKFLKEHILPKPRPYYRVD
QSAEPDVWLDAVQVWEVKCADLSLSPVYKAATGLVDPEKGISLRFPRFLRIRDDKKPEDS
TSGAQIADLYKKQQQIQNQGDKADTEDYY
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatagcatcgttctttcagcccaagaccaaggacaaggatgttcagaag
aaagccaatgacaagcaagtgataaagcctgtcaaaagtccactcaaggctcaaaatgga
gttcaggaggaggactcgcccgtcaagaaggttcccaaacgtacccggcggattttagac
agtgatgacgacgagcaagaagtgaaccccaccaaacaacaagtcaaagaggatttgttc
aaggcagtgcccgccctgatgtctccgccaccacctccccgggcccccgccacgcccgcc
acacccgcctctcccgcctcctccatgtccccggatactcccaactctgtctcatcttct
gggggcatcagcaaacggaagacagcaaggaagatgtttcccaaaagaaaactggccgac
agcctcgccggcagcgacggtcaaccgcaggaagatgccaccaacacgcagactgtgccg
acggccgagggacaaccgagcaagcgagcccgtgtggaagacggtgacgatgacaacaac
acggaaaggaagatgtttctcaaaagaaaactggccgacagcctcgccggcagcgacggt
caaccgcaggaagatgccaccaacacgcagactgtaccgacggccgagggtcaaccgacc
aagcgagcctgtgtggaagacagtgacgatgacaacaacacggacaaggtcacaaagcaa
gaaagagacgatgaggcagaggcgaagaggcaggtgaggatgccggacaaaaaccaagag
gaagcagaggatgtggaaaaaaagctcgaagatggtgaagaggagaagagggatgtaaaa
gagccaaaagagaaagccaagaaagcgccagtcagcagcttctttgctcctagaaaggct
tcagtgaagaccgtgaagaaacgtgatggagagaagaaaaacaagacaacaacttcccca
tctgtggaggacagcaaagatgcacaaagtgagtcactggtgaccgagacggattacaac
ccttccagaaccaactaccacccactggagcacgccttctggaaggaaggacaaaaagtc
ccttacctggcggtggctcgcacctttgagaagattgaagaggactctggcagactgagg
aacatcgaaactctggccaacctgttccgctctgtgctactgctttctccagacgacttg
ctgtgctgtgtatacttgtgtttaaaccaactgggacccgcctatcttggcctggagctt
ggggttggagagacggtgctgatgaaagctgtcgcgcaggccacgggacgacagctggac
aagatcaaggcagaggctcaagagcgcggagacctcggtctggtggccgcgagctcccga
agtaaccagcgcaccatgttcaggccagccagcctcacagtgggtggcgtcttcaagaag
ctcaaggagattgcaggcatgagtggtcactcggccatgaataagaagattgacatcatc
aaaggactcttcgtggcctgccgtttctccgaggctcgctacatcgtgaggtcactagtg
ggaaagctgaggattggattggccgaacagagcgtgctgtcggcattgagtcaagctgtc
tgcctcacgacgcccgagaagggcaactcccccgccgtgatagacgccggcaaagggatg
accactgagagccgacgagcttggattgaagagaagagcctcattcttaagcagacttac
tgtgagatgcccaactacgacatcctcatcccggtccttctcaaagaaggcattgaccag
ctgcccaatcattgcaagctcaccccaggcgtacccctgaggcccatgctggcgcacccc
actaagggtgttggggaggtgatgaaacgcttcgatgaggcggcattcacctgcgagtac
aagtacgacggcgagcgtgcgcaaattcacatcctggagagtggtgaggttcagatattc
agtcgcaaccaggaggacaacaccagcaagtatcccgacatcatctctcgtattcccaag
gtgaagaaagactctgtcgtctcatgtgttctggactctgaggcagtagcatgggaccgt
gagaagaaacagatccaacccttccaggttctcaccacgcgtaagaggaaggatgttgat
gcatcagacatcaaagtccaagtatgcgtgtacgcctttgatcttctctacctcaacgga
gagtctctggttagacagccgctctgtcggcgccgggcgctactgcgagagtccttcgcc
gaagtggagggagagtttttatttgcccgatatctcgactcagacaacactgagaccatt
gcagaattcttggagcagtctgttcgagactcatgcgaaggcctaatggtgaagactctg
gagaaggatgccacctatgaaatcgccaagcgctcccataactggctcaagttaaagaag
gattacctggagggtgttggcgacacagtggacctgtgtgttatcggcgcctacctgggt
aaaggcaagaggacggggacctacggcggcttcctgctggcctgctacgacgaagacaat
gaagagttccagtcggtctgcaagattgggaccggcttcaaggatgaagatctggagcag
caccacaaattcttgaaggaacacatcctgcccaagccccgcccctactaccgtgtggac
caatcggctgagcccgacgtgtggctggatgccgtgcaggtttgggaagtgaagtgtgcc
gacctgtcgctgtcgcccgtgtacaaggccgccacgggattggtggatccagagaaaggg
atctccctacgttttcctcgcttccttcgcatccgagatgacaagaaacccgaagactcc
accagcggagctcagattgccgacctgtacaagaagcagcagcagatccagaatcaggga
gacaaagccgacacggaggactactattga
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