Syngnathoides biaculeatus (alligator pipefish): 133511970
Help
Entry
133511970 CDS
T09681
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133511970 (pms1)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
133511970 (pms1)
BRITE hierarchy
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HATPase_c
HMG_box_2
CDH1_2_SANT_HL1
Motif
Other DBs
NCBI-GeneID:
133511970
NCBI-ProteinID:
XP_061697105
LinkDB
All DBs
Position
14:complement(16958453..16999663)
Genome browser
AA seq
891 aa
AA seq
DB search
MKQLPAETVRLLSSSQVITSVTNVVKELLENSLDAGASTIDVKLENHGLDRIEVRDNGRG
IKAADAPVMAVPHFTSKIHSHEDLERLQTYGFRGEALGSVCAVAEVSITTKTEVEDISTQ
YTLNPQGHIVSQKPTHLGQGTTVSVLKIFKNLPVRRQYYSSAKRCKDEVKKIQDLLVAYA
IIKPDLRLTLTHNKVVLWQKAKAADHRSALLATLGSSVVANLVHCHHHQEQAEIFLDGFF
PKPGADSSSTSTSVPDKTFIFVNNRPVYLKDIIKLLRQHYTAQYRDESTQNRYPILMLQI
TIAPSSVDVNLTPDKSQVLLHNKESLFTALEALLVSLYGYRANRDLPTKQIGPETLFSSS
SETGNLQLDDEISATKNVVGFQTLSDPHERSNYLMSNNPPSSRRTSDNSSSSSVAEDWIV
NHIPGEQESNFSVGGDETVHLPSELEEDEDSTRPRISAEDWSKGTALMDPISREPLQPVK
ILQVSTPSHSAVTELNESKKTVNVITEKHTTLNAFDLISNRAMRVPPSPVALFEKEARIE
VLREKPAASLQEISTAVNDRWKSLMEEDRKKYEEKAKKHLEHHDRTCAAKVANCGGGSKE
RRPSSTLGQKRKAPPLSNQQLLDELFSAQPQKKPKSLTPKPSQPLPCCVSSLRTRLQRLS
SSRNTAAPQGLCFINQLASQSVWVILCGQRLMLLNPFRLQESLLHKRLLQNYILPAVTLQ
NPIQLTDRTLGGSESTDALCNMEKQRPDLNGRMLISDPRLVANGFKVRLTPGSASAERHL
EVTGLADSVPFLGVEDLGEIMTAVLRRNAKTVQECRPLKVSNYLQSEAVRLARQMPAHLS
REDVGDILKQMEEQLGESNHTCLHGRPFLQLLSNIPHTEHEAKALFKPLGL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgccagcagagactgtgcggctgctgtccagctcacaggtcatcacttcg
gtgacgaatgttgttaaagaactgcttgagaactcactggatgctggggcttcaactatt
gacgtcaaactggagaaccacggcctggatcgaatagaagtacgtgataacggccgtgga
atcaaagctgcggacgctcccgtgatggccgtgccccatttcacctccaagatccacagc
cacgaggacctggagcgcctccagacttacggcttcaggggagaggcgctcggctccgtt
tgcgcagtggcggaggtgtccatcaccaccaagacagaggttgaagacatcagcacccag
tacacgcttaatcctcaaggacacatcgtctctcagaagccaactcacctaggccaaggt
acaaccgttagtgtattgaaaattttcaagaatcttcctgtgagacgacaatattactca
tcagctaagaggtgcaaggatgaggtgaagaaaatccaagacctcctggtggcctacgcc
atcataaaacctgatttgagactcacactgactcataataaggtggttctctggcagaag
gccaaggcggccgaccacaggagcgccctccttgctacgttggggtccagtgtagttgct
aacctagtccactgtcaccatcaccaagagcaagcagagatttttctagatggttttttc
ccaaagccgggagcagattcctcttcaaccagtacttctgttccagacaaaacattcata
tttgtcaacaatcggcctgtctaccttaaagacatcattaagttacttcgccaacactat
actgcgcagtatagggatgagtccactcaaaaccgctaccccatcctaatgcttcaaatt
accattgcaccatcttcagtggatgtcaatctgacacctgacaagagccaggttctcctt
cacaacaaggagtctttgtttactgcgttggaagctctgctggtctctctctatgggtat
cgggccaatcgtgatttaccaacaaaacagattggcccggaaaccttgttttcatcatcc
tcagagactggcaatctgcaactagatgatgagatcagtgcaacgaagaatgttgtggga
tttcaaaccctaagcgatccacatgaacggtccaattacctaatgagcaacaacccacca
tcaagcagacgcacctcggacaacagctcttcgtcctcggtggcagaggactggattgtc
aaccatatacctggtgagcaagagtctaacttttctgttggtggtgatgaaactgtgcac
ttgccaagtgaactcgaggaggatgaagactcaaccagaccccgtatatcagctgaagac
tggagcaagggcacggctctgatggacccgatatctcgagagcctctgcagcctgtcaaa
attcttcaagtctctacacccagtcactccgctgtcactgagctcaatgaaagcaaaaag
acggtcaacgtcatcacagaaaagcataccactctgaacgcctttgacctgatcagcaac
cgggcgatgagagtgccaccgtcaccggtcgcccttttcgaaaaggaagcccgcatcgaa
gtactcagggagaaacctgccgccagtctacaggagatcagcaccgctgttaatgacagg
tggaaaagtctaatggaggaagaccgtaagaagtatgaggagaaggccaaaaaacaccta
gaacatcatgaccgcacctgcgctgccaaggttgcaaactgcggaggcggctcgaaagag
cggcgcccaagctccacgctgggccagaagcgcaaggccccgccactctccaaccagcag
ctgctggacgagctcttctctgcacagccccagaagaagcccaagagcttgacgccgaag
ccctcgcagcccctcccctgttgcgtttcgagtcttcgcacacggctccagcgcctctcg
tcatcccggaacactgcggcaccgcagggcctctgttttataaaccagctggcctctcag
agtgtctgggtcattttatgtggtcagaggctaatgttgttaaacccctttcggctacag
gagtctttgctgcataagagacttctgcagaattatatacttccagcagtcactttgcag
aaccctatacagttaacagatagaactttaggtggaagtgaatccacggatgctttgtgc
aacatggagaaacaaagacctgatctgaatggcaggatgttaatctctgacccaaggctt
gtggccaatggatttaaagtcagactcacaccaggtagtgcgtcggccgagagacatctg
gaagtgaccgggctggccgacagcgtgcctttcctcggtgtagaggacctcggggagatc
atgactgcggttcttcgtaggaatgccaaaactgtgcaggagtgtcggccgctcaaagtg
tccaactacctgcaaagtgaagccgttcgactggcccgacagatgcctgcgcatttatcg
agggaggacgtgggggacatcctaaaacagatggaagagcaacttggtgagagcaaccac
acttgtctccatggaaggccttttctacaactgctgtcgaacatccctcatactgaacac
gaggctaaggctctgtttaaacctttgggactatga
DBGET
integrated database retrieval system
