Syngnathoides biaculeatus (alligator pipefish): 133513081
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Entry
133513081 CDS
T09681
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133513081 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbia03000
]
133513081 (arid1b)
03021 Transcription machinery [BR:
sbia03021
]
133513081 (arid1b)
03036 Chromosome and associated proteins [BR:
sbia03036
]
133513081 (arid1b)
Transcription factors [BR:
sbia03000
]
Eukaryotic type
Helix-turn-helix
ARID
133513081 (arid1b)
Transcription machinery [BR:
sbia03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133513081 (arid1b)
Chromosome and associated proteins [BR:
sbia03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133513081 (arid1b)
BRITE hierarchy
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
133513081
NCBI-ProteinID:
XP_061699410
LinkDB
All DBs
Position
15:complement(11643741..11840573)
Genome browser
AA seq
2183 aa
AA seq
DB search
MAAQVASAPSRNNNKNKKLSSALGTELNSGKSGGAGGSVQQRSGQMLAAADGTLNNHHRR
TEPGMVRSTSAGHGKDGNNLTSSNSNTSSMETGQIANHKLKCVGGGDPPQSLTPQPQFGQ
FAPHPQRQMHNNNNNGQGPRGAVDHHGGKENLLGGQVESQQQVQVKGEGHLKSTEGMMSS
RYDHSNLGPTGNNSEFNNNYYSTRSYEQHGGQQQQQGMAISSAHNSMDNSHEAGYQNSQY
SQYPPYNRTRYGGGTYGMMGPSGCRQPENVIMSSNSSASHGKSTLGASSSGFQRFPGPTQ
QQQQQQQQHPSGSTPTLNQLLTSPSPMMRGYGGAYQDYSASSAQQGLHGKDVGPQYGATT
AHGWGGQPRNHPHAISSGNGGQSLGRSQVSSMDFMAMKRSQLYGMANNPYSNPQQPGGGP
YPPGQPYTPPPSQRYPMSMQSRSRMAMGSMQFPQQQVAPYSQQGMAGYSQQQQASHQGTP
PYFSPPQQTPPAPNRSPYLHSRSLPQEAPQDNYTSRGPSAGNPGKNNTEDGISSQHRPSS
LPDLSGSIDDLPTGTEAGLGSAVTSTGNQGEQAGASTQRQSPFSPHASPHLHSQRSGPSP
SPVGSPAGSTQSQQSRSGSGPISPASGPPAGTNTPGSTSNPQTSGNGPDGSRPPITHSPM
AQERGFMSNMARNQAGSQFPLYPTMSPYSQSGPTGPYGPQESQFRHQGNYPRQSNYSGTT
SANYSGPGAGMTNSLAMNASSPMHSHGPGQPLPGGRNPGLGNHNRGYPTVAPSSPSMPQP
AGPGMGPPSLGTSNRKTQDVAGSTVPGAINAIHSRQGSYQGPSVSQASAVIPYSRPAGNN
VSAMGNVQGPAYNVMPLGFIGMSGDGMMSPDVKVKTDAKDDNDPTNDTHKPKSQDGHNSS
STGPQHCASQPATPSNALAVPSPLSPSPASLSSYHGDDSDSISSPPWPVKAPPSPKPTQN
SSSSSGDRISRLYELGLEPERRLWVERYLSFMEERGTPVSQLPIVGKKPLDLWKLYIAVR
EIGGLAMVNKNKKWRELSTTLSVGTSSNSASSLKKHYIQYLFAYECKMERGEEPPADSSS
SSSGSVAAGDSRKQVKIQPPSPANSGGSLQGPQTPQSSGGSSTVECAGDLLPPTRGTTPP
GQGTPLPPNRTSVSVQDPFSEVSDPAFQKRAASLPPSGPYQQGLGMPDMMMRMQYDAKDP
FAGMRKMAAADPYMPGQMPPGSVQDLYGRPHTALTISQRSQYYGYDRRPDHLMGMEGSMG
PPGSQNNMAPHSEGSMYSPSRYPSQQRHDGYSPQYPGMPYGMHPSGMYQQQQQSYKRSMD
GVYGPPPKRHESDMYGLQYSNQQADMYNQYGGGYSGPDHRPIQGQFPYAYPRDRIGPSMP
SPHGMMGGVPPPNHNTDGPNMWPSRTDLGYPYPNRQGHPSQMPPYVSIGREDMDGRPGQD
QWHRHSPYMSSSGGMPPFSPRYPPSSYSNSQSLASHPPRAPSPGAFQRSLDSRVSPSKAA
FLSAIKMSKPGMTMVGSQGCGPLGQFPHSLRRDLNYPPGSVEGTLPILRPHRKLTSKDTG
MPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLSQLPGFLELIVEYFRRCLI
EIFGILQEFEVGAVTKESLLDLSSYRKEETILDNEIEIAVQATSDSVEELPGNTMKEYLA
VTGELISTEVKKKPDQCFKKDENEIKAESKNECDVVKLPVAEVEPKPKQASKYDKFPITI
VNETDLSEDMKDCLVDQFTSGLLHWEAGGGDTTAHIQTYFEPRSGTHTRVEDKMLNANQD
DDGKEQPGKRITATIDDVLCARVDALSNAHPARSLPSYPFRVHPDGEQDHITLLEDEPRC
LDETPLTTRSAWQDSLAKRCLCISNIVRGLSFIPGNDTDMSRHPALVLLLGRLLLLHHQH
PERTRSRPSYQRDELDLGLSSSQSEWWWECLSQLRENAMVTLANIAGQLDLSTYADTICL
PILDGLLHWMVCPSAEAQDPFPSAVAYSQLTPQRLVLECLCKLSIQEGNVDLLLATPPFS
RQEKLFTVLVRYVGQRKAQVYREMAVAITSHLAQGDPIAARVIAMQKGSVGNLVAFLEDG
VSMAQYQHNPHSLLHMGHPHMDPPSVSMLCRAAKGLLAMAKVEENKTQFVLYESRLLDIS
ISSVLNAGVVAIICQVLFHLGKL
NT seq
6552 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccctccagaaataacaacaaaaacaagaaattatcc
agcgccttgggcacggagctcaattcggggaaatccggtggagcaggaggaagtgtgcag
cagcgcagcgggcagatgctggccgccgcagatgggactctgaataaccatcaccgccga
acggagcccggcatggtgcgttcaacttccgcgggtcacggcaaggatgggaataacctc
acatcgtctaattcaaacacttcctccatggaaacgggacagatcgccaaccataaactg
aaatgtgtcgggggcggagacccccctcagtccctcacaccgcagccgcagttcggccaa
tttgcgccacatccgcagcgtcagatgcacaacaacaacaacaacggacaaggacccaga
ggggctgtggaccaccacggtggtaaagagaaccttctggggggtcaagtggagtcccaa
cagcaggtgcaggttaaaggtgagggacatcttaaatccacagaggggatgatgtcgtca
aggtatgatcactccaacttggggccaaccggcaacaactctgagttcaacaacaactat
tactcaacaagatcttatgagcaacatggcggacagcagcagcagcaagggatggcaata
tcctctgcacataacagcatggacaactcccacgaagcaggctaccagaacagccagtac
agccagtaccctccctataatcggacacggtacggtggagggacctatggcatgatgggc
ccctctgggtgcaggcaacctgaaaacgtcatcatgagcagcaactcctcagcgagccac
ggcaagtccactttgggagcctcttccagtggcttccagaggttcccgggaccaactcag
cagcagcagcagcagcagcagcagcatccctcaggctccacaccgaccctcaaccagctg
ctaacgtcaccgagtcccatgatgcggggctacggaggggcctaccaagactacagcgcg
tcctcagcgcagcagggtctgcatgggaaagatgtgggccctcagtacggagccaccacg
gcccacggctggggagggcagcccaggaaccacccgcatgcaattagttcgggcaatgga
gggcaaagccttgggagaagtcaggtgtcctccatggacttcatggcaatgaagcgttcg
caactttatggtatggccaacaatccgtactcgaacccgcagcagcctgggggcgggcct
taccctcccggccagccgtatactccgcctccctcgcagcgttatccaatgagcatgcag
tcaagaagtcgaatggccatgggcagcatgcagtttcctcagcagcaggtggcaccatac
agccagcaggggatggcaggctatagccaacaacagcaggcaagccatcagggaactccg
ccctatttcagtcccccacaacaaacacccccggctcctaaccggagcccttacctgcac
tcacgatcgctgccccaggaggcaccgcaagacaattacaccagcagaggtccaagtgca
gggaatcctgggaagaacaacaccgaagatggcatctcctcccagcaccgcccttccagt
ctgccggatctgtctggctcgatagacgacctcccaaccgggacagaggctggtttgggg
tcagccgtcaccagcactgggaaccaaggagagcaggctggcgccagcacccagagacag
tctcctttctcgcctcacgcctcaccgcaccttcacagccagaggagcggaccatctccc
tcccctgtggggtcgcctgcaggctccactcaatcccaacagtcgcgttcaggctctggg
cccatctcccctgccagcggtccccctgctgggaccaacacaccaggctctacgtcaaac
ccacagacctctgggaatggaccagatggatcccgcccaccaatcacccactcacctatg
gctcaggaacgagggttcatgtccaacatggcaaggaaccaggctggctctcagttccca
ttgtatcccacgatgagtccctactcccaaagtggtcccacaggcccttacggacctcaa
gaaagccaatttcgacaccaagggaactaccctcgacaatccaactacagtgggactaca
agtgccaactacagcggccctggcgcaggtatgaccaacagtctggccatgaacgcaagc
agccctatgcacagccatggccctggtcaacctctacccggaggacgcaatccaggactg
ggaaaccataacagagggtaccccaccgtagcacccagctctcccagcatgcctcagcca
gcgggaccaggaatgggccccccctctttgggtacttccaaccgcaagacacaggatgtg
gcaggatccaccgtaccaggcgcaatcaacgcaatacacagcaggcagggcagctatcaa
ggaccaagcgtcagccaagcaagcgccgtaatcccctacagtcggccagcaggcaacaat
gtttcagccatgggcaacgtacaaggtccagcctacaatgtgatgcctttaggattcatt
ggaatgtcgggggacgggatgatgagcccagatgtgaaagtgaaaacagatgcaaaagat
gacaatgaccccaccaacgacactcacaagccaaagtcacaagacggtcacaacagcagc
agcactggcccccagcattgtgcatcgcagccggccacgccaagcaacgcactggctgtc
ccttcgccgctgtcacccagcccggccagtttgtcctcctaccatggagatgatagtgac
agcataagcagcccaccttggcctgtcaaagcacctccaagcccaaaacccacccaaaac
tcgtcatcgtccagtggtgatcgaatctcgcgactgtatgagttgggtttggagccagag
aggcggctttgggtggagcgctatttgtccttcatggaggagagaggaactccagtttcc
cagttgcctattgtcgggaagaagcctctggatctctggaagctctacattgctgttcgg
gagattggaggccttgccatggtaaacaagaacaagaaatggcgcgagctgtccaccaca
ctgagcgtgggaacatcgagcaactctgccagctcgctaaagaagcactacatccagtac
ctgtttgcctatgagtgtaagatggagcgaggcgaagagccaccagcagacagcagtagc
agcagtagtggaagtgtggctgcaggagacagcaggaaacaggtcaagatccagcctccc
tcacctgctaactcaggcggctccctccaaggtccgcagacaccgcaatcttcaggcggc
agctccacagtagaatgtgcaggggacctcttaccgcccacccggggcaccacccctcct
ggacagggcacacctttgcctcctaacaggaccagcgtgagtgtgcaggatcccttctca
gaggtcagcgacccggctttccagaagcgtgctgcgtccctgccaccgtctggtccgtac
cagcaaggcctcggcatgcctgacatgatgatgaggatgcaatacgatgccaaggacccc
tttgctggcatgaggaagatggcagctgctgatccctacatgccgggccagatgccgcct
ggaagtgtgcaggacttgtacggtcggccgcacacagccctgaccattagtcaacgctca
cagtactatggctacgacaggagaccggaccacttgatggggatggagggaagcatgggt
ccccctggtagtcagaacaacatggcacctcacagtgagggtagcatgtattctcccagc
agatacccttcacagcagagacatgatggctacagtccacagtaccctggcatgccatac
gggatgcacccttctggcatgtaccaacagcaacagcagagctacaaacgatccatggac
ggcgtgtatggtcctccccccaaaaggcacgagagtgacatgtacggtttgcagtactcc
aaccagcaggcagacatgtataaccagtatggcgggggttattcgggcccagatcacaga
cccatccaagggcagttcccttacgcttacccccgcgatcgtatcggtccttcaatgcca
agcccgcatggaatgatgggtggggtaccgcctcctaaccacaacactgatggtcccaac
atgtggccatccaggacagacctgggttatccctatcccaatcggcaaggacatccgtcc
caaatgcccccttacgtttcgattggcagagaagacatggatgggcggccggggcaggat
cagtggcatcggcattctccttatatgtcatcatcaggcggtatgcctcccttttctccc
cgctaccccccttcgtcttactccaattcacaatctttggcaagccacccacctagagcc
cccagtccaggagctttccagcgctcattggactctcgtgtgtcacctagcaaagcagct
ttcctatcagccattaagatgtcaaagcctgggatgaccatggtgggctctcagggatgt
gggcctctgggtcagtttcctcacagcctgagaagggacctcaactacccacctggatcg
gtggagggtaccttgccaattctccgccctcaccgcaagcttacctccaaggacacagga
atgcctgaggcctggcgcgtgatgatgtctctcaaatcggggctcctagcagagagcaca
tgggctcttgatacgatcaacattctgctttacgatgacagcactgttgcttcttttaac
ctctcccagttgccgggcttcctggagctcattgtcgagtacttccgccgttgcttgatt
gagatctttggcatcctgcaagagtttgaagtaggggcggtgacaaaggaaagcttgttg
gacctctcctcctaccggaaggaagagaccatcttggacaatgaaatagaaattgcagtc
caagctacatctgattctgtggaggaactaccgggaaatacgatgaaggaatatcttgct
gttactggagagctcatctcaactgaagtgaagaaaaaacctgatcagtgctttaaaaaa
gatgagaatgaaattaaagcagagagtaaaaatgagtgtgatgttgttaagctgcctgtt
gctgaagtggaaccaaaacctaaacaagctagcaaatatgataagttccccattaccatt
gtcaacgaaaccgaccttagtgaagacatgaaagattgcttggttgatcagttcaccagt
gggctgctccactgggaagctggtggtggcgacaccacggctcacattcagacgtacttt
gaaccccgcagtgggacacataccagggtggaggacaagatgctcaacgcaaaccaggat
gacgacgggaaggaacaacccggaaaacgcatcacggctaccatcgatgatgttctgtgc
gcgcgggttgacgcactctcaaacgcccaccctgctcgctcattgccatcgtaccctttc
agggtgcatccagatggagaacaggaccacatcactttgttggaggatgagccacgctgc
ctggatgaaaccccgttgaccacaagatcagcctggcaggactcattggccaaacgctgc
ctctgcatctccaacatcgtccgtggcttgtccttcatcccagggaatgacacggatatg
tcgcgacaccctgctctggtgcttcttcttggcaggctccttctgttgcaccaccaacac
cctgagaggaccagatcgcgtcccagctatcaaagagacgagctggacttggggctttca
agcagtcaatccgagtggtggtgggagtgtttgagtcagctcagggagaatgcaatggtt
accctggctaatatcgctggccagctggatctctccacttatgctgacaccatctgcctc
cccatcttggacggtctcctccattggatggtgtgcccgtcagccgaagcccaggacccc
ttcccttcggcagtggcctactcccagctgactcctcagagactggttctggagtgcctt
tgcaagctgagcatccaggaaggtaacgtggatctcctccttgccacaccacctttcagt
cggcaagagaaactcttcacagtacttgtccgctatgtaggtcagaggaaggcccaagtg
tacagggagatggcggtggccatcacctcccacctggcacaaggagacccaatcgcggca
cgtgtcatagccatgcagaaaggcagcgtgggtaatttggtagcctttttagaggatggc
gtcagcatggcgcagtaccagcataaccctcacagcttattgcacatgggacacccccac
atggatccacctagcgtgagcatgttatgtagagcagctaaaggcctgctggccatggcc
aaagtggaagagaacaagacacaatttgtgctctacgagagcagattgttagacatttcc
atttcttccgtacttaacgctggagtagtggcgattatttgccaggttctctttcacttg
gggaagttatga
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integrated database retrieval system
