Syngnathoides biaculeatus (alligator pipefish): 133514372
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Entry
133514372 CDS
T09681
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
KO
K06236
collagen type I alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133514372 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133514372 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133514372 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133514372 (col1a1a)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133514372 (col1a1a)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
133514372
NCBI-ProteinID:
XP_061702005
LinkDB
All DBs
Position
16:complement(9382617..9397872)
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AA seq
1448 aa
AA seq
DB search
MFSFVDMRLALLLSAAVLLVRAQGEDDSKSGSCTHDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPVIPHDECCPICPDDGYHGQSQVEGPKGDRGPKGDRGPVGPAGN
DGIPGQPGLPGPPGPPGPPGLGGNFSPQMSSGYEDKSPVMPVPGPMGPMGPRGAPGPPGP
SGPQGFTGPPGESGEAGPAGAMGPRGPPGPSGKNGEDGESGKPGRPGERGPAGAQGARGF
PGTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGETGAAGENGTPGAMGPRGLPGERGRAGP
AGAAGARGNDGAAGAAGPPGPSGPAGPPGFPGGPGAKGEAGAQGARGPEGPAGARGEPGN
PGPAGAAGPSGNPGADGAAGPKGLPGAAGVAGAPGFPGPRGPPGNQGAAGAPGPKGNTGE
AGPPGAKGEPGAKGDAGAPGVQGPAGPSGEEGKRGARGEPGPVGGRGVPGERGATGGRGF
PGADGASGPKGATGERGAPGVAGPKGSTGEPGRTGEAGLPGAKGMTGSPGSPGPDGKMGA
TGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGDAGKSGERGVMGPTGPVGAPGKDGE
VGAQGPAGPNGPAGERGEQGPAGPPGFQGLPGPQGAIGETGKSGEQGVPGEAGATGPTGA
RGDRGFPGERGAPGPMGPAGTRGSPGSAGNEGSKGDAGAPGAPGAQGPPGLQGMPGERGA
AGLPGLRGDRGEQGAKGTDGAPGKDGPRGMGGAIGLPGPAGATGDKGESGPAGPVGPAGA
RGAPGERGEAGPPGPAGFAGPPGADGLVGAKGEAGNNGAKGDAGPPGPSGPTGAPGPQGP
VGNSGPKGARGPAGPPGATGFPGAAGRVGPPGPAGNAGPAGPSGPGGKEGPKGNRGDTGP
AGRPGEIGAPGVPGPAGEKGSPGADGAPGSAGIPGPQGISGQRGIVGLSGMRGERGFPGL
PGPTGEPGKQGHAGPSGERGPAGPMGPPGLAGPAGETGREGSPGNEGSAGRDGPAGPKGA
RGEAGPAGAPGAPGPPGAPGPVGPAGKNGDRGETGAAGPAGPAGPAGPRGPAGAAGLRGD
KGETGETGERGLKGHRGFTGMQGAPGPAGHAGEAGPAGVAGPAGPRGASGAAGSPGKDGM
TGLSGPTGPPGPRGRSGEMGPSGPPGPPGPPGAPGAPGGGFDLGFIAQPQEKGPDPFRLY
RADDANVLRDRDLEVDGTLKTLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCTQDAIKVYCNMETGETCVAPTQREVAMKNWYISKNIKEKKHVWFGEAMNEGFQF
EYGSEGSLPEDVNIQMTFLRLMSTEASQNITYHCKNSISYMDAATGNLKKAVILQGSNEI
EIRAEGNSRFTYSVLEDGCTSHTGAWGKTIIEYKTSKTSRLPIIDIAPMDVGAPDQEFGL
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatgcggctggcgctgctgctcagcgcagcggtgcttctggtg
agagcccagggcgaggacgacagcaaaagcgggagctgcacccacgatggccaggtgttt
gctgaccgtgacgtgtggaaacccgaaccatgccagatctgcgtgtgcgacagcggcacc
gtgatgtgcgatgaagtcatctgcgaggacacgaccgactgccccaaccccgtcatcccc
cacgacgagtgctgccccatctgtcccgacgacggctaccatggtcaatctcaggtcgag
ggacccaagggagatcgtggacccaagggagataggggtcctgttggtcccgctggtaac
gatggtatccccggccagcctggtctgcctggacctcctggcccccctggaccccctggc
ctcggtggaaacttctcccctcagatgtctagcggctatgaggacaagtctcctgtcatg
ccggttcctggacccatgggcccaatgggacctcgtggagcccctggacctcctggtcct
agcggcccccagggtttcactggtccccccggtgagtctggagaggccggacctgctgga
gccatgggcccccgtggaccccctggaccctctggcaagaacggagaggatggtgaatct
ggcaaaccaggacgtcctggtgagcgtggacccgccggcgctcagggtgctcgcggtttc
cccggaacccccggtctgcccggcatcaagggacacagaggattcagtggtctggatggt
gccaagggagacagtggccctgctggacctaagggagagactggagctgctggtgagaac
ggaactcctggtgctatgggacctcgtggtctgcctggtgagagaggtcgcgctggccct
gctggagctgctggtgctcgtggtaacgatggtgccgccggtgctgccggacctcccggt
cccagtggccccgctggacctcctggattccccggtggccctggagctaagggtgaggct
ggagcccagggtgctcgtggacccgagggccctgctggagcccgtggtgagcccggtaac
cctggacccgctggtgctgccggaccttctggtaaccctggagctgatggagctgctgga
cctaagggactccctggtgctgctggagttgctggagctcccggattccccggaccccgt
ggacccccaggaaaccaaggtgctgctggtgcccccggacccaagggtaacactggtgag
gctggtccccctggagccaagggagagcctggtgccaagggagatgctggtgcccctgga
gttcaaggacctgctggaccttccggtgaggagggcaagagaggagcaagaggagagcct
ggtcccgttggaggccgtggagttcctggcgagcgcggtgcaactggcggtcgtggtttc
cctggtgctgatggcgcttctggacccaaaggtgccactggtgagcgtggtgcccctggt
gttgctggacctaaaggttccaccggtgagcccggccgcactggtgaggctggcttgccc
ggagctaagggtatgactggcagccctggcagccctggacccgatggcaagatgggagct
actggtgcccctggacaagatggtcgccctggaccccctggctctgttggagccagaggc
cagcccggtgtcatgggattccccggacccaagggagctgctggcgatgctggaaagtcc
ggcgagagaggagtgatgggacctactgggcctgttggtgcccccggaaaggacggcgag
gttggcgctcagggacctgctggacctaacggacctgctggtgagagaggtgagcaggga
cctgccggacctcctggattccagggacttccaggaccccagggtgccattggtgagact
ggcaagtccggagagcagggtgtgcccggagaggctggagctacaggacctactggtgct
agaggtgacagaggtttccccggtgagcgtggtgcccccggtcccatgggacctgctggt
acccgtggatcccctggatctgctggaaatgagggttctaagggagatgctggagcacct
ggtgctcccggagctcagggcccacccggactgcagggaatgcctggtgagcgtggtgct
gccggtcttccaggactgagaggagacagaggtgaacaaggagctaagggtaccgatggc
gctcctggcaaagatggtcctcgtggaatgggtggtgctattggacttcccggacctgct
ggagccaccggagacaagggtgagagtggccccgctggacctgttggacctgctggagcc
cgtggagcccctggtgagcgtggtgaggcaggaccacccggacctgctggatttgctgga
cctcctggtgccgatggtcttgttggcgctaagggagaggctggtaacaatggtgctaag
ggtgatgctggtcctcctggtccttctggacccactggtgcccccggacctcagggtccc
gttggaaactctggccccaagggagctcgcggacccgctggacctcctggtgctacaggc
ttccctggtgctgctggcagagttggaccacctggccccgctggcaatgctggacctgct
gggccttctggacccggtggaaaggaaggacccaaaggaaaccgtggtgacaccggacct
gctggtcgccctggtgagattggagctcctggagtccctggtcccgctggtgagaagggt
agccctggtgccgatggtgctcctggtagtgctggtattcctggacctcagggtatcagt
ggacagcgtggtattgtcggtctgtctggaatgagaggagagagaggtttccccggtctc
cctggacctactggagagcccggaaagcagggacacgctggccccagtggtgagcgtgga
cctgctggcccaatgggaccccctggattggctggacccgctggtgagaccggacgtgag
ggttcccctggtaatgagggatctgctggccgtgatggacctgctggacccaagggagcc
cgtggagaggctggccctgctggagctcctggtgcccccggaccccctggtgcccctgga
cccgtcggacctgctggaaagaacggtgaccgtggagagactggagctgctggccctgct
ggccctgctggtcctgctggacctcgtggccccgctggagccgctggacttcgtggagac
aagggagagactggtgagactggtgagagaggcctgaagggacacagaggattcactgga
atgcagggagctcctggacccgctggccatgctggagaggcaggacctgctggtgttgct
ggacccgctggacctagaggagcttctggagctgccggttctcctggtaaggatggtatg
actggcctttctggtcccactggacctcctggacctcgtggacgctctggcgagatggga
ccttctggtcctcccggacctcccggaccccccggcgcaccaggcgcccctggtggcgga
tttgacctcggtttcattgcccagccccaggagaagggacccgatcccttccgtctgtac
cgtgccgatgacgctaatgttctgcgtgaccgcgaccttgaggtggacggcactctgaag
accctcagccagcagattgagcagatccgcagccccgatggtactcgcaagaaccctgcc
agaacctgccgtgacctgaaaatgtgccacccagactggaagagcggagagtactggatt
gaccccgaccagggctgcactcaggatgccatcaaggtttattgcaacatggagactgga
gagacctgcgtggccccaactcagcgtgaggttgccatgaagaactggtacatcagcaag
aacatcaaggagaagaagcatgtctggtttggcgaggcaatgaatgagggcttccagttc
gagtacggcagcgagggctctctgccagaagatgtcaacatccagatgaccttcctgcgt
ctcatgtcaactgaggcttcccagaacatcacataccactgcaagaacagcatctcctac
atggatgctgccactggcaacctgaagaaggctgtgatcctccagggctccaacgagatt
gagatcagagctgagggcaacagccgcttcacctacagtgtcctggaggatggctgcacg
tcacacaccggtgcatggggcaagacaatcattgagtacaagacatcgaaaacatctcgc
ctgcccatcattgacatcgctcctatggatgttggtgctccagaccaagagtttggcctt
gaagttggacctgtctgtttcttgtaa
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integrated database retrieval system
