Sphingomonas bisphenolicum: SBA_ch1_26090
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Entry
SBA_ch1_26090 CDS
T08354
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBA_ch1_26090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbin03019
]
SBA_ch1_26090
Enzymes [BR:
sbin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBA_ch1_26090
Messenger RNA biogenesis [BR:
sbin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBA_ch1_26090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
PEP_mutase
ChuX_HutX
ERCC3_RAD25_C
ARS2
Motif
Other DBs
NCBI-ProteinID:
BBF70409
LinkDB
All DBs
Position
1:complement(2664354..2665739)
Genome browser
AA seq
461 aa
AA seq
DB search
MQFNDLGLAEPIMKALASKNYVTPTPIQQKAIPVLLEGKDLCGIAQTGTGKTAAFALPSL
DYFARNPRPTPVKGCRMLVLAPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPIGKQIRA
LSVGVDVVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKMLPADR
QNLFFSATMPKEIEALAAQFLNNPVKVSVAPQSTTAERVRQQMYFVNQGEKQALLHLVLK
SEEIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKLLVA
TDIAARGIDVSGVSHVINFEIPNVAEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE
KATRVKLEVVALPENFMDAVRALPKPAAPKKGPSQTPQQQARRADGQRKYQDGQRQQRGA
PDRAHRTDAEGGEKKPFRGRGRGRGGVGTHKGAVQRTGAPR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaacgaccttggtctcgccgagcccatcatgaaggcgctcgcctccaaaaac
tacgtcaccccgaccccgatccagcaaaaggcgatccccgtcctgctggaaggcaaggat
ctgtgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgcccagtctc
gattatttcgcccgcaaccccaggccgacgccggtcaagggctgccggatgctcgtgctg
gcgccgacccgcgaactcgccgcgcagatcgcgcagagctttcgcgattatggccgtttc
ctcaagctgtcggtcgaaaccgtctttggcggcgtgccgatcggcaagcagatccgtgcg
ctcagcgtcggcgtcgatgtcgtcgtcgcgacccccggccgcctgctcgacctgatcgac
cagcgcgccttcaccatcaaggacacggaaatcttcgttctcgacgaagccgaccagatg
atggacatgggcttcatacacccgttgaagcgcgtcgccaagatgctgcccgccgaccgt
cagaacctcttcttctcggccaccatgcccaaggaaatcgaggcgctcgccgcacagttc
ctcaacaatccggtcaaggtcagcgtcgccccgcaatcgaccacggccgaacgcgtccgc
cagcagatgtatttcgtgaaccagggtgagaagcaggcgctcctccatctggtgctcaag
agcgaagagattgaccgcgcgctgatcttcacccgcaccaaacatggcgccgatcgcgtc
gtgcgcttcctggaaggcgcgggcatcgacgccttcgccatccatggcaacaagagccag
ggccagcgcaccaccgcgctgcaggcgttccgtcagggcaaggtgaagctgctggtcgcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccacgtcatcaacttcgaa
atccccaatgtggccgaacaatatgtccaccgcatcggacggacggcgcgcgcgggagcc
gacggcatcgcgatcagcttcgtggcggatgacgagcgcccctatctgaaggcgatcgag
aaggcgacccgcgtgaagctggaagtcgtcgcgctgccggagaatttcatggacgcggtg
cgggctttgcccaagccggcggcacccaagaaggggccgagccagaccccgcagcagcag
gcgcgccgcgccgacggccagcggaaatatcaggatggtcagcgtcagcagcgcggcgcc
cccgatcgcgcgcatcgcaccgatgccgagggcggcgagaagaagcccttccgtggtcgc
ggtcgcggtcgcggcggcgtcggcacgcacaagggcgccgtccagcgcaccggtgcaccg
cgctaa
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