Shewanella benthica: SHEWBE_1099
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Entry
SHEWBE_1099 CDS
T06707
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbk
Shewanella benthica
Pathway
sbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHEWBE_1099 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_1099 (rnr)
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_1099 (rnr)
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SHEWBE_1099 (rnr)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHEWBE_1099 (rnr)
Transfer RNA biogenesis [BR:
sbk03016
]
Prokaryotic type
tRNA degradation factors
SHEWBE_1099 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
SQH75068
UniProt:
A0A330LZL1
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All DBs
Position
SHEWBE:1015371..1017860
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AA seq
829 aa
AA seq
DB search
MIKDPHLKREQENYENPIPSREFILEYLRSEKSPLNRERIAQALKLESEQQLEALRRRLR
AMERDGQLVFTRGQAYGLPERMDLLTGTIIGHRDGFGFLKLAEGGDDLFINNRDMMMYFH
GDKVLAQKAGVDRKGRREARIVRLVEQRSAALVGRFHLDSGMAFVIADDRRIGQEILIAD
EDRNGARQGDVVVLELTRRPGRYVKAAGKVTEVLGKQQAPGMEIEIALRNYDLPHTWSSQ
IEKKLRAIPDEVTEADKEGRVDLRHLPLVTIDGEDARDFDDAVYAEAKKSGGWRLWVAIA
DVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGAEVSDKLKSIFPHLQTLQSLYLTLDVTR
AQRGAIAFETTETQFVFNAERKIDSIVPRYRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLTMGGGLKPTPTDYQALMESITDRADAELIQIMLLR
SMKQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRFLLAKEQGEAKEKWTPGG
GYHYQLEELDLLGVECSTTERRADEATRDVSDWLKCEFMQDHVGDTFDAVVASVTHFGMF
VRLNKLFIDGLVHISSLGSDYYQYDNMRQRLVGESSGQVYQIGDKVTVKVASVNLDDRQI
DLMMAGEEGKSTRPSRGKKPMTARERVNAEGAKLGKADKSGKPKRRGSRSTAAAGKASAD
SAKTNTSGGAKKSAAKTKTTAKKSKAKKSSAKKASVKKSPAKRKAKESK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaagaaaattatgaaaaccccattccaagc
cgtgagtttattttagaatacttacgatcagaaaaatccccgttaaaccgtgaacgcata
gcacaggcgcttaaactcgaaagtgagcagcagcttgaggcgcttagacgtcgtctgcga
gccatggagcgggatgggcagctggtgtttacccgaggacaggcctacggcctccccgag
cgtatggacctgcttaccggtacgattatcggtcacagagatggttttggcttcttgaag
ctggctgagggcggtgacgacctctttatcaataaccgtgacatgatgatgtatttccac
ggcgataaggtgctggcgcagaaagccggagtcgaccgtaaggggcgccgcgaagcacgt
atcgtacgcctggtcgaacagagatccgccgccctagtgggacgtttccatttagattcc
ggcatggctttcgtcattgccgatgacaggcgtataggccaagagatactcattgccgat
gaggaccgtaatggtgctcgtcagggtgatgttgtggtgctcgaattgacccgtcgcccg
ggccgttatgtgaaggccgcgggcaaagtcaccgaagtgttaggcaagcagcaggctcct
ggcatggagatcgagattgccctgcgtaactacgatctgccgcatacctggtcgagtcag
attgagaagaagctgcgcgcgattcccgatgaagtgactgaagctgacaaagagggccga
gtcgacctacgtcatttgcctttagtcaccatagatggcgaagatgcccgtgatttcgac
gatgccgtttatgccgaagctaagaagagcggtggctggcgtctttgggtggcgattgcc
gatgtgagccattatgtgcgcaccgaatctgcattagataaggaagcacgtgctcgagga
aactcggtgtacttcccatcacaagtcatccctatgctgccggaaaaaatctctaatggc
ttatgttctttgatgccagaggtcgatcgcttatgtatggttgccgagatgactatctct
gcggcaggtaaactctcaggctataaattctatccggccgtgatgcattctcatgcccgt
ctgacctatactcaggttgccgatatgctcgaaggcgcagaggtgagtgataagctcaaa
tctatatttccgcatctgcagacgttgcaatctctgtatctgactctggatgtgacacgt
gcacaacgaggcgccatcgcctttgaaactactgagactcagtttgttttcaatgccgag
cgcaagattgacagcatagtgccgagatatcgtaatcaggcgcataagatcatcgaagag
tgcatgattttggccaacgtggcttcggccaagtttgtcaagaagcacaagggcgaagtc
ttataccgggtgcatgagtctccatccgagcagaagctgacgaactttaaagacttcctc
aaggaacgtggcttgaccatgggcggcgggcttaagcctacaccgacagattatcaggcg
ctgatggagtcgatcaccgacagagccgatgccgagcttatccagatcatgttgctgcgc
tcgatgaagcaagcggtttacacgccggataatgaaggacactttggtttagccttagag
gcctattctcactttacttcgcccattcgtcgttaccctgacttgatcttgcatcgtgtt
attcgcttcttgctggcgaaagaacagggagaggcgaaagagaaatggacgcccggtggt
ggttatcactatcagctagaagagttagaccttctcggtgtcgagtgttcgaccacagag
cgccgcgccgatgaggcgacccgcgatgtcagcgattggctcaaatgtgagtttatgcaa
gatcacgtgggcgataccttcgacgctgtagtggcctcggtcactcatttcggcatgttc
gtccgtctgaataaactctttatcgatggcttagtgcatatctcaagtctggggagcgat
tactaccaatatgataatatgcgtcagcgtctggtgggtgaatcatccggtcaggtatac
cagataggcgacaaggtcacggtgaaggtggcgagcgtcaatctggatgacagacagata
gacttgatgatggcgggtgaggaaggtaagtctacacgtccaagccgtggcaagaagcca
atgactgccagagagcgagtcaatgcagagggcgctaagctaggcaaagcagataagagc
ggtaaacctaaacgacgcggttctcgctcaacagcagcggcgggtaaagcttctgccgat
tcagctaaaaccaatacaagcggtggagctaaaaagtccgctgctaaaacaaaaacgacg
gctaagaagtcgaaggctaaaaagtcttcagcaaaaaaggcttcagtaaaaaagagccca
gccaagcgtaaagccaaagaaagtaagtaa
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