Shewanella benthica: SHEWBE_2525
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Entry
SHEWBE_2525 CDS
T06707
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbk
Shewanella benthica
Pathway
sbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SHEWBE_2525 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_2525 (recB)
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SHEWBE_2525 (recB)
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SHEWBE_2525 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
CDC45
AAA_11
AAA_25
AAA_30
Osteopontin
Motif
Other DBs
NCBI-ProteinID:
SQH76488
UniProt:
A0A330M351
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All DBs
Position
SHEWBE:complement(2389509..2393351)
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AA seq
1280 aa
AA seq
DB search
MSLTPSTSSPTIPVIEPKQSQPLDTLTLPFGGSRLIEASAGTGKTYTIAGLYVRLLLGHG
IVKPLTCQQILVVTFTNAATGELRDRIRNKIQLAYRHFIGIDTGDELLASLHRATPESEH
PLALKRLDLALKSLDEASIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDF
WREHCYPLPGYLAEIIQKKFADPDALSKQLKPLLGASQANAHPQPEDFNKLQGTLTQSMS
RLKLIWPREREAIETLLHSLPLNGVRFGKKPDAYPKLAIMLDAMDNWCKYSMSLPPMKVM
ESLSLGGLKLNKGGEVPTPEQAPVLDHIERLCLLIKDFIPSFLYCARDGISRRFSLQKSE
RNLMTPDDLLLTLEQALRPDSTDVHEDKLSLANLIAKRFPVALIDEFQDTDPLQFAIFNR
IYQPELTSTADHSADNNDSNDDTDNNDNNDNNDNSDNNDNSDNNDDNDDNDNCADNSESK
PASKEVSLLMIGDPKQAIYAFRGADIHTYIQAREQTKQHYSLGTNYRSSRNMVLSVNALF
ENRDDPFINKAIVFESVQPSPFADNKIFIEQNRDTSALKIKLLSEDPEKGLNKASARKRL
AEDAAAEITRLLTESQQGQCSISGKALKAQDIAVLVRDRNEAGVMRESLSQRQIGSVFLS
RDSVFNTLEARELALVLHALATPKDERALRSALATSLLGYNAASIHGFNQDEMVRQDLLE
QFDNLHHNWLRRGIMPALLSLANETQLIERLLQGEDGERRLTDFRHLAELLQQKATELDG
ISALVNWYEQALIANNGNEEAQLRLASEQNLVQIVTIHKSKGLEYPVCFIPFVSLARDNR
RKPAPMLYHDKNRLIWDIEQTDEGWERHKRENLAEDLRLLYVAITRPVYQCYLYIANHSR
FTKKAGITSQLHETGIGYLLGIEDKACDFSRIQIQAQALICDAISVSEVQADVSTQALEK
VTDERRTLAPKMLKRKRYTPWRVGSYSGLVKDLPHERVAPGADDESFPELEIIQDEVDLT
PSRFTFERGANAGSFMHLVLELIDFTLAEAQLPEQLPAAMEKYGIDESWFSMLNTWYLDI
LAAPLTQDGSLTLSQLTPSQKLVEMEFYLPINQLKADELNELLERYGYSSGLNFESLKGM
LKGFIDLTFEHKGQFYIADYKSNHLGDDFVHYGCDAMAGAIRSHRYDLQYIIYTLALHRY
LSLRMTNYDYDQHIGGSYYLFLRGMSVDSPMSGIFYDKPPKALIQALDALFDSEQTQSVD
DMAHKSPGQPAMDNNQMEVK
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaactccttcaacaagcagtccgactatcccggttatagagcctaagcagtct
cagcccttagataccctcaccttgcctttcgggggcagtcgccttatcgaagccagtgcg
ggcacaggaaaaacctataccatcgccggcctgtatgtgcgcctgttactcggtcacggc
atcgtcaagcccctcacctgtcagcaaatattggtggtcaccttcaccaatgcggccacc
ggcgagcttagggatcgtattcgcaacaagatccaactggcttatcgccactttatcggc
atagatacgggtgatgaactgctggcgtctctgcaccgcgccacgccggagtctgagcac
cccttggcccttaaacgtctggatctggcactcaagtccctggacgaagcctcaattttt
accattcatggcttttgtcagcgaattttggccgacatggctttcgagtcatctctgcta
ttcgaatcagaattcacgctggatgacagcgagtttctgcaccatgcggtgcgcgatttt
tggcgcgaacactgttatccgttacccggatacctggcggaaatcattcagaaaaagttt
gccgaccccgatgccctgtctaaacaactcaaaccattgcttggtgcgagtcaggccaat
gcccatccacagcccgaagactttaacaaactccagggcacactcacacagagcatgagc
cgactcaaactcatctggcccagagaacgtgaagcgatagagaccttactgcattcactg
cccctcaatggcgtgcgtttcggtaagaaacctgacgcttaccccaagttggccatcatg
ctcgatgccatggacaactggtgtaagtacagcatgagtctcccccccatgaaggtgatg
gagagtctttctctgggcggacttaagctcaataaaggcggcgaagtcccgacgccagaa
caggccccggtgctggatcatatcgagcgactctgtttactcatcaaagatttcattcca
agcttcctctactgtgccagagacggcatatcgaggcgtttttcattgcaaaagtctgag
cgtaacttgatgacgccggacgatttattactcactctggagcaagccctgcggccggat
agcacagatgtgcatgaggataagcttagcctggctaacctgatagccaagcgctttcct
gtggcccttatcgatgagtttcaagataccgatcccctgcagttcgctatctttaaccgt
atctatcaaccagaattgacctcaacggcagaccatagtgccgataacaacgatagcaac
gatgacaccgataacaacgataacaacgataacaacgataacagcgataacaacgataac
agcgataacaacgatgacaacgatgacaacgataattgcgccgataatagcgaaagtaag
ccagcatccaaagaggtgagcctcttgatgattggcgatccgaaacaggccatttatgcc
ttcaggggcgccgatattcacacctatattcaggcgcgcgagcagaccaagcagcactat
agcctaggcaccaactaccgctccagccgcaacatggtcttgtcggtcaacgccctgttt
gagaatcgagatgacccatttatcaataaggccattgtgttcgagtcggtgcagccatcc
cccttcgccgataacaaaatattcatcgaacaaaatagagacacctcggcgctgaagata
aagttgctgagtgaagacccggaaaagggactcaacaaagccagcgccagaaaacgtttg
gccgaagacgccgccgcagaaatcacaaggttgctgacggaatctcaacagggtcaatgc
agcatcagtggtaaggcgctaaaagcccaagatattgccgtgctggtacgtgatagaaac
gaagctggggtaatgcgtgagtcattatctcagcgtcaaatcggctcggtattcttaagc
cgcgacagcgtatttaacaccttagaggcccgggaattggctttggtgttgcacgcctta
gccacgcctaaagatgagcgagcactgcgctcagccctggccacctctttactgggttat
aacgccgcatcaattcatggattcaaccaagatgagatggtgaggcaagacttgctggag
caattcgataacctgcatcacaactggctaagacgcgggatcatgcccgccctgctcagt
ctggccaatgagactcagcttatcgagcgtctgctccaaggcgaagatggcgagcgacgt
ctgaccgatttcaggcacttagccgagcttctacagcaaaaagccaccgaactcgacggc
attagcgccctggtcaactggtacgagcaagcccttatcgccaacaatggcaacgaagag
gcccagctcaggctcgcgagtgaacagaacctagtgcaaatcgtcaccatacataagagt
aagggactcgagtatcccgtctgctttatcccctttgtcagtctggcccgggataatcgc
cgtaagccggcccccatgctttaccatgataaaaatcggcttatatgggacatagagcag
acggatgaaggctgggagcgtcataaacgggaaaacttagccgaagatctacgcttgtta
tatgtcgccatcacgcgcccggtttatcaatgctatctctatatcgccaaccatagccgc
ttcactaaaaaagccgggatcaccagtcaactccacgagaccggcattggctacctgctg
ggaatagaagataaagcctgtgacttttctcgcattcaaatccaggcccaagcgttgatc
tgtgatgccatcagtgtcagtgaagtgcaagctgatgtgtcgacacaagccttagaaaaa
gtcaccgatgaaagacgcaccttagcgcctaaaatgcttaaacgtaaacgctatacccca
tggcgtgtaggcagttactcgggattagtcaaagacttgccccatgagcgagttgccccc
ggcgccgatgatgaaagtttccccgagcttgaaataatccaggatgaggtcgacctaacg
ccttctcgatttaccttcgagcgtggtgccaatgccggtagctttatgcacttagtgctg
gagctgattgatttcaccttggccgaggcgcagctgccagagcagctgcccgccgccatg
gagaaatatggcatagatgagtcttggtttagcatgctcaatacctggtatctggatatt
ctcgctgcgcccctgactcaagatggctcactgaccttatctcagctgactccgagtcaa
aagttagtggagatggagttttatctgcccattaaccagcttaaagcagatgaactcaat
gagctgctcgaacgttatggttacagctcagggctcaattttgaatccctcaaggggatg
cttaaaggatttatcgatctgaccttcgagcataaagggcaattttatatcgccgattac
aaatcgaaccatctgggtgatgattttgttcattatggttgcgacgctatggctggcgcc
attcgtagccacagatacgacttgcagtacatcatctataccttagccctgcacagatac
ttaagcttgagaatgaccaactacgattatgaccaacatattggaggcagttattacctc
ttcctgcggggcatgtcggtggattctcccatgtcagggatcttctatgataagccgcct
aaagcgcttatccaggcactagacgcactatttgacagtgaacaaactcaatcggtggat
gatatggcgcacaaatccccggggcagccggcaatggataataatcagatggaagttaaa
taa
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integrated database retrieval system
