Shewanella baltica OS185: Shew185_2395
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Entry
Shew185_2395 CDS
T00571
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shew185_2395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_2395
Enzymes [BR:
sbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shew185_2395
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Shew185_2395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
ABS08533
LinkDB
All DBs
Position
2851113..2854601
Genome browser
AA seq
1162 aa
AA seq
DB search
MTHISALTPPAVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELE
LSYLLSKTGLKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMM
RLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRSLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMHVPTDGTETTKAVVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPVLFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDGISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGESCEIDEDE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETEAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSHDHVIDPMFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHRLGDNK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcaatcaaattcagact
ctgtccaccgttggcggcgtttgccaagccgttacactcgccagtttagcgcgtcaacat
aaggggacgaccttagttgtcaccagtgatacgccaagcgccttaagcttagagctagaa
ctgagttatttgctcagtaaaacaggccttaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttgatctcccagcgactcgaaaccctg
tcgcagctgtctcaaattgagcaaaacatcgttatcgtgcccgtcacgaccttgatgatg
cgcctgccacctaaggcctatttgagcgccaacgtgtttgtgctgaaaaaaggcgacagc
tacaagttacacgatgtacgccagcatttaaccgacactggctaccattcagttgaacaa
gtgtatgaacacggcgagtttgccattcgcggctcgattctggatatcttccccactggg
atgaatatgccactgcgcatcgagctattcgatgaagaagtggagaccatccgccatttt
gatcccgaaacccaacgttcattgcaacctgttgactcgattcgcttattgcccgcgaag
gaatttccgaccgacagctctgccatcgaaggctttagacaaagataccgtcgccgtttt
gaggtcatagttaaagagccggaatcagtttatcagctggtgagccgcagcttgatgccg
gcggggattgaaaactacctgccgctgttttttgatgacacagcgaccctattcgattac
ttgcccaaggacactcagttagtcactttaggggatatcgaaaagtcggcgcgcgcgcat
ttgcaagaagtcgaacatcgctatcaagacagacgagtcgatccactgcggccgctactg
gcgcctaaagagctgtatttactcattgaagagttatttgccgcctttaaaccgctgcca
cgttatcaaatgcacgtgccgacagatggcactgaaacgacaaaagctgtggtgattgct
gccagcaccctgcccgatatcagcgccaaccataaattaaagcaaccactgttagcgctg
caagattacgccagcagcgccaaacgcatgttgtttagcgctgagtccgagggtcgccgc
gaagcgctgcttgaattgctcgctaaaattcagcttaaacctgtgctatttaaccatttt
gatgaatttattcaaagtgatgccaagttaggccttatcgtgtcgccgctgtcacgcggt
tgtttgctgcagatcagcgccaaagatggcatcagtatcatttgtgaaactgagctcttc
ggccatcgaatttcccagcaacgtcgccgtgaaaaacagcgtcagatcagtaacgatgcc
ctgattaaaaacttggccgaactcaaagtcggtcagcccattgtgcatttagaacacggt
gttgccctctataaaggcttagtcaccctagatacgggtggactggtcgccgaatacctg
caattggaatacgccggcggcgataaactgtatgtgccagtgtcttcattgcaccttatc
agccgctacagtgttggcgccgacgaagacgcccacttaaataaactcggcaatgagacg
tgggctaaagccaagaaaaaagccattgaaaaaatccgcgatgttgcggccgagctgctt
gatgtctatgcccgtcgccaatctcgtcccggcgaaagctgcgagattgacgaagatgaa
tacgcccaattcgctcgcggtttccccttcgaggaaaccgtcgatcaagaaagcgccatc
atcgccgtgttagccgatatgcaatcgccaaccgcaatggacagattagtctgtggcgat
gtgggctttggtaaaaccgaagtcgccatgcgcgccgcctttgtggccgtcaacgccggt
aaacaagtggtcgtgctggtcccgaccacattgcttgcccagcaacactatgaaaacttt
aaagacagatttgccgactggcctgtggtcaccgaagtgatgtcacgctttcgcaccgcc
aaagagcagactcaagtgctgcagcaattggaagaaggcaaagtcgatatcgttatcggt
actcacaagttattgcaatctgaggccaagtttgaaaacttaggcctgctgatcatcgac
gaagaacacagattcggtgtgcgtcagaaagagaaaatcaaggcactgcgtgcgaacgtg
gatatcctaactctgacggcaacgcctattccacggaccttaaatatggccatgtcgggc
atgcgcgatttatcgattatcgccaccccgcccgccaaacgtttagcggtaaaaaccttt
gtgcgggaatccgatcctgcaaccgtgcgcgaggccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgagaaatgtgcccaaggtatt
atcgatttactgccagaagcgcgggtagtcgtcgcccacggtcaaatgcgtgagcgcgac
cttgagcgggtgatgtctgacttttatcaccaaagattcaacgtgttagtctgtaccact
attatcgaaactggtatcgacgttccgagtgccaacaccattattatcgagcgcgccgat
acctttggtctggcgcagttacaccaattacgcggccgcgtcggacgctcgcaccatcag
gcttatgcctatttgatgacgccgcatcctaaacgtatgactcccgatgcgcgtaagcgt
ttagaagccattgatgcccttgaagatctcggtgcaggctttatgctcgcgacccaagat
ttggagatccgcggtgcaggtgaactcttaggtgatgagcagagcggccatatttcgaaa
attggttttagcttatacatggaaatgctcgaagcggcagtcaaagccttaaaacaaggc
aaagagccatcgctggcgcaaatgctgaatcaacaatgtgaaattgaactgcgtatccct
gccctactgcctgaggcctatgtgagcgacgtgaatattcgtctatcgctctataaacgc
atcgcaggttgcgaaaccgaagcggcgctggatgagttaaaagtcgaattaatcgaccgt
tttggcctattgcccgaaccgacgcgcaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggggcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtcatgatcacgtcatcgatcctatgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcggccgaaaccagcaaa
gacaggctcgctttagtgaaactcttgctcgaacaattatcgcaacatcgtcttggagat
aataaatag
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integrated database retrieval system
