Shewanella baltica OS185: Shew185_2679
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Entry
Shew185_2679 CDS
T00571
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03030
DNA replication
sbm03410
Base excision repair
sbm03420
Nucleotide excision repair
sbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew185_2679
03410 Base excision repair
Shew185_2679
03420 Nucleotide excision repair
Shew185_2679
03430 Mismatch repair
Shew185_2679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbm03032
]
Shew185_2679
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_2679
Enzymes [BR:
sbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Shew185_2679
DNA replication proteins [BR:
sbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shew185_2679
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Shew185_2679
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew185_2679
MMR (mismatch excision repair)
DNA ligase
Shew185_2679
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shew185_2679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABS08814
UniProt:
A6WPS5
LinkDB
All DBs
Position
complement(3202547..3204604)
Genome browser
AA seq
685 aa
AA seq
DB search
MQDIQLDTLLSEDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKL
EALYPHLIVADSPTQRVGGLALAKFDQITHLKPMLSLDNAFDEADFSAFHKRVTDKVGEV
SFCCEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELV
EVRGEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALG
VVEPDSHPLAKTHFEQLQQLKSWGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDG
VVMKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPV
FVGGVTVSNATLHNADEIARLGIKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPH
NCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKE
LVQSPADLFKLTASMMTMLDRMGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAA
NLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAI
EAPSADAQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSK
LAKAQELGVKVMDEDELLALLAANA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgatacacttctgtctgaagacgttaccccagaaaacgcatcg
caggtgatgcaggcgctcagccaatcactgaacgagcacaacattcgttactatgtggat
gatgcgccgagcattaccgattctgagtacgacaggttgatgcagcgtttactcaagctt
gaggcgttatacccccatttgattgtggctgattcaccgactcaaagggtgggcggattg
gcgctcgccaagtttgatcagatcactcatcttaagcctatgttaagtctggataacgcc
ttcgatgaggctgatttcagtgctttccacaaacgtgtcacggataaagtcggtgaggtg
agtttttgctgcgagcctaaacttgatggccttgccgtgagtatcttgtatcgccatggc
gtgcttgagcgcgctgcgacccgcggcgatggttcagtgggtgaagacatcactgaaaac
gttaaaaccattaaatcgataccgcttaaattgcgcggtaatgatttccctgaactcgtt
gaagtgcgcggcgaagcctttatgcctaaagccgcctttgaagcgctgaacgacagggcg
cgcgccaaggatgaaaagctctttgttaatccgcgtaacgctgctgccggcagcttgcga
caactcgacagtaaaattaccgccgcccgctcattggctttttatgcctatgcgctaggg
gttgttgagccggattcccatccgttagctaaaacccatttcgagcagttacagcagctt
aaatcgtggggcttacccattagtagcgaaatcaaagtctgcgctgaattaagccaagtc
tatgactactataagaacattcttactcgtcgcagcgatttagcgtttgaaatcgatggc
gtagtgatgaaagttaacgatattgcccagcagcaacgtttaggttttgtggctaaatct
ccccgctgggcgattgcctataaattccccgcacaggaagaaatgactttgctcgaaggg
gttgatttccaagtgggccgcacaggtgccgtgacgccagtcgcgcgcttaaagccagta
tttgttggtggcgtgacggtatcgaatgcgacgctgcacaatgccgatgaaattgcccgc
ttaggcattaaagtcggtgacactgtgatcatccgccgcgctggcgatgtgatcccacaa
attgttgccatagtgccagaaagacgtcctgaaacggcgactgacattgtatttccgcat
aattgccctgtgtgtggcagtttagtcgagcgtctcgaaggtgaggcagtggcgcgctgt
agcggtggtttattctgcgaagcgcagcgtaaagaagcgattaagcatttcgcatcccgc
aaggctttggatatcgatggcatgggcgacaaagtcgtcgagcaattgattgataaagaa
ctcgtccaaagtcctgcggatctgtttaagctcaccgcctctatgatgactatgctcgac
cgcatggggatgaagtcggcaaccaatttagcagcggcgattgaagcggccaaaaccaca
acacttgcgcgtttcttatatgccttgggcattcgcgaagtgggcgaggcgacagcggca
aaccttgcggcgcactttgctagtttagatgcgctgcgggtggcaactgtggagcagtta
actgaagtggaagatgttggcgccgtggtggcccaacatgtggcccacttttttgctcag
ccgcataaccttgaggttatcgatgccttaatcgccgctggtgtgcattggccggccatt
gaagcgccaagtgctgatgcacagccgcttaaaggccaaacctgggtattgaccgggacc
ttaaatcaactcaatcgtaacgatgctaaagcgcagctgcaggcgctgggggcaaaagtt
gctggcagtgtgtcgaaaaataccgattgcttagtggcaggtgaggcggcaggttcaaaa
ctcgctaaagcgcaggagcttggcgttaaagtgatggatgaggatgagttattggcactc
ctcgccgcgaacgcttga
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