Shewanella baltica OS195: Sbal195_2377
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Entry
Sbal195_2377 CDS
T00622
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbn
Shewanella baltica OS195
Pathway
sbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal195_2377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbn03019
]
Sbal195_2377
03400 DNA repair and recombination proteins [BR:
sbn03400
]
Sbal195_2377
Enzymes [BR:
sbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal195_2377
Messenger RNA biogenesis [BR:
sbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal195_2377
DNA repair and recombination proteins [BR:
sbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sbal195_2377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABX49545
UniProt:
A9L2V6
LinkDB
All DBs
Position
complement(2803688..2805676)
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AA seq
662 aa
AA seq
DB search
MFNPIPETNPYISLLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTAL
QLPHLSLVISPLLALMKDQLEFLQSKGIYAASIDSTLSAEQSQQVMADARSGKLKILMVS
VERFKNERFRQFIQSVPLSMLVVDEAHCISEWGHNFRPDYLKLPDYRRELEIPLVLLLTA
TATRKVKLDMAKRFDIAPEHIVQTGFYRPNLDLTVLPLSTQEKNTLLVQQIASFSGAGIV
YVTLQQTAETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGID
KSNIRFVIHYDLPKSIENYSQEIGRAGRDGALSHCVTLANLDGLNTVENFVYGDTPEREG
IAQVIEAIRLEQDSGQWECQLNGVSTASNIRQLPLKTLLVQLEILGVVKPLFAYYADVNY
KFLVDKHAILSRFNPERQAFLTQIFNHTQMKKIWGALDFDALYSATGHERSRVLAALEYL
AEHQLIELETKRITDVYRVDVAALARPELIDELYHYFIDKEQKEIARIAQLVRFFELETC
LSHNLSRYFDDNETPAVCGHCSVCRGNIAKLRYSTEPTWPTDQQILADLRELKYHLTAKG
IEALSLDTYCRCLAGMSVPLVSRFQVRKLSGFGRCEKLRYAEIKQKVESLLSQLDDKRVE
HE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcccattccagaaaccaatccatacattagtttgttgcagcaggattttggg
ttttctgaatttcgccctggccaagcgcaaacgataacacaactgttggcggggaagtcg
agtttagcgatttttccgacgggttccggtaaatccctttgttatcaatttacagcattg
cagttaccccatttgagtttagtgatttcgcctttactcgccttgatgaaagatcagctg
gaatttttacaatctaagggaatttatgcggccagcatagattcaaccttaagcgccgag
cagagtcagcaagtgatggcagatgcgcgctctggcaagctgaaaatcttgatggtgtcg
gtggaacgtttcaaaaatgaacgttttcggcaatttattcaatcggttccgctgtccatg
ctggtcgtcgatgaggcgcattgtatttcagagtggggccataattttcggcccgattat
cttaaattgcccgattatcggcgcgagcttgagatcccattggtactgttattgacggcc
acagcaacacgtaaagtgaaactggatatggccaagcgctttgatattgcgcctgaacac
atagtgcaaacgggattttatcgacccaatttagatttgactgttctgcctttatcaacg
caagagaagaataccttactggttcagcagattgcatcattctcaggtgccggcattgtg
tatgtaactttgcagcaaaccgccgaaacggtcgcacgacttttgagccaacaaggtata
gtcgccagtgcctatcatgctggatttgaagatgaaaaacgtcaacaaattcaaaatgat
tttatgcaggataagctgcaagtggtagtggcaaccatcgcttttggcatgggaatcgat
aagagcaatattcgttttgtgatccactacgatttgcctaaatccattgaaaactacagt
caagaaatcggcagagcagggcgtgatggtgcgttatcccattgtgtcactttggccaat
cttgacgggctcaataccgttgagaattttgtgtatggcgatacgccggagcgagaaggt
atagcacaagttattgaggctattcgacttgaacaagattccggtcagtgggaatgtcag
ctcaatggcgtctcgacggcgagtaatattcgccagttaccgttaaaaacgttactcgtt
caattggaaattttaggtgtagttaagccgttattcgcttactacgctgacgttaattac
aagtttttggtcgacaaacacgccattctcagccgatttaatcccgagcggcaggcgttt
ttgacgcagatttttaatcatacgcagatgaagaaaatatggggcgcgttagattttgat
gccttgtacagtgcaacgggtcatgagcgcagccgcgtgttagccgcgctggaatattta
gctgaacatcagttgattgaattagaaactaaacgaattaccgatgtgtatcgggtggat
gttgccgcattagcgcgtcccgaactcatcgatgagctgtaccattattttatcgataaa
gagcagaaagaaattgcgcgaatcgcgcagttagtccgcttttttgaacttgagacgtgc
ttaagccacaatttatcccgttattttgatgataatgagacgccagcggtctgcggtcat
tgcagtgtttgccgtggcaatattgctaagttgcgctattcgacggaaccaacttggccg
acagatcagcagatattggctgatttgcgtgagttgaaatatcatttaacggctaaaggc
attgaggctttgtcactcgatacctattgtcgttgcctcgcaggcatgtcggtgcctttg
gtgagtcgttttcaagtgcgtaagttaagtggcttcggccgctgtgaaaaattgagatat
gctgaaattaaacagaaagttgagtcactgttgtcgcaactagatgataaaagagttgaa
catgaataa
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