Shewanella baltica OS223: Sbal223_1952
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Entry
Sbal223_1952 CDS
T00803
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sbal223_1952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbp03400
]
Sbal223_1952
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal223_1952
DNA repair and recombination proteins [BR:
sbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sbal223_1952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SBP_bac_3
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACK46456
UniProt:
B8E9C3
LinkDB
All DBs
Position
complement(2309994..2313482)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTHISALTPPAVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELE
LSYLLSKTGIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMM
RLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMHVPTDGTEATKAVVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPALFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDGISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYKGLVTLDTGGLLAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGESCEIDEEE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETEAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSHDHVIDPMFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHRLGDNK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcaatcaaattcaaact
ctgtccaccgtgggcggcgtttgccaagccgttacactcgccagtttagcgcgtcaacat
aaggggacgaccttagttgtcaccagtgatacgccaagcgccttaagcttagagctagaa
ctgagttatttactcagtaaaacaggcattaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttgatctcccagcgactcgaaaccctg
tcgcagctgtctcaaattgagcaaaacatcgttatcgtgcccgtaacgaccttaatgatg
cgcctgccacctaaggcctatttaagcgccaacgtgtttgtgctgaaaaaaggtgatagc
tacaagttacacgatgtacgccagcatttaaccgacactggctaccattcggttgagcaa
gtatatgaacacggcgagtttgcgattcgcggctcgattctggatatcttccccactggg
atgaatatgccgctgcgcatcgagctattcgatgaagaagtggaaaccatccgccatttt
gatcctgaaacccaacgttcattgcaacctgttgactcgattcgcctattgcccgcgaag
gaattcccgaccgacagctcggccatcgaaggctttagacaaagataccgtcgccgtttt
gaggtcatagtcaaagagccggaatcagtttatcagctggtgagccgcaacttgatgccg
gcggggattgaaaactacctgccgctgttttttgatgacacagccaccctattcgattac
ttgcccaaggacactcaactcgtcaccttaggggatatcgaaaagtcagcgcgcgcgcat
ctgcaagaagtcgaacatcgttatcaagacagacgagtcgatccactgcggccgctactg
gcacctaaagagctgtatttactcatcgaagagttatttgccgcctttaaaccgctgcca
cgttaccaaatgcacgtaccgacggatggcactgaagcgacgaaagcggtcgtgattgcc
gccagcaccctgcccgacatcagcgccaaccataaattaaagcaaccactgttagcgctg
caagattatgccagcagcgccaaacgcatgttgtttagtgccgagtccgagggtcgccgc
gaagcgctacttgaattgctcgctaaaattcagttaaaacctgcgctgtttaaccatttt
gatgaatttattcaaagtgatgccaagttaggccttatcgtatcgccgctgtcacgcggt
tgtttgctgcagatcagcgccaaagatggcatcagtatcatttgtgaaactgaactcttc
ggccatcgtatttcccagcaacgtcgccgtgaaaaacagcgtcagatcagtaacgatgcc
ctgattaaaaacttggccgaactcaaagtcggtcaacccatagtgcatttagaacacggt
gttgccctctacaaaggcttagtcacgctagatacaggcggactgctcgccgaatacctg
caattggaatacgccggcggcgataaactgtatgtgccagtgtcttcattgcaccttatc
agtcgctacagcgttggcgccgacgaagacgcccacttaaataaactcggcaacgagacc
tgggctaaagccaagaaaaaagcgattgaaaaaatccgcgatgttgcggccgagctgctt
gatgtctatgcccgtcgccaatctcgtcccggagaaagctgcgagattgacgaagaagaa
tacgcccaattcgctcgcggcttccccttcgaagaaaccgtcgatcaagaaagcgccatc
atcgccgtgttagccgatatgcaatcgccgaccgcaatggacagattagtctgtggcgat
gtgggctttggtaaaaccgaagtcgccatgcgcgccgcatttgtggccgtcaacgccggc
aaacaagtggtcgtgctggttccgactacattgcttgcccagcaacactatgaaaacttt
aaagacaggtttgccgactggcccgtggtcaccgaagtgatgtcacgctttcgcaccgct
aaagagcagactcaagtgctgcagcaattggaagaaggcaaagtcgatatcgttatcggt
actcacaagttattgcaatctgaggccaagtttgaaaacttaggcctgctgatcatcgac
gaagaacacagattcggtgtacgtcaaaaagagaaaatcaaggccctacgtgccaacgtg
gatatcctaaccctgaccgcaacgcctattccacggaccttaaatatggccatgtcgggc
atgcgcgatttatcgattatcgccaccccgcccgccaaacgtttagcggtaaaaaccttt
gtgcgcgaatccgatcctgcaaccgtgcgcgaggccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgaaaaatgtgcccaaggcatt
atcgatttactgccagaagcgcgggtagtcgtcgcccacggtcaaatgcgtgagcgcgat
cttgagcgggtgatgtctgacttttatcaccaaagattcaatgtgttagtctgtactact
attatcgaaactggtatcgacgtcccgagtgccaacaccattattattgagcgcgccgat
acctttggtctggcgcagttacaccaattacgcggccgcgtcggacgctcgcaccatcag
gcttatgcctatttgatgacgccgcatcctaaacgtatgactcccgatgcgcgtaagcgt
ttagaagccattgatgcccttgaagatctcggtgcaggctttatgctcgcgacgcaggat
ttggagatccgcggcgcaggtgaactcttaggcgatgaacagagcggccatatttcgaaa
attggttttagcttatacatggaaatgctcgaagcggcagtcaaagctttaaaacaaggc
aaagagccatcgctggcgcaaatgctcaatcagcaatgcgagattgaactgcgtatcccc
gccctgctacctgaggcctatgtgagcgacgtcaatattcgtctatcgctctataaacgc
atcgcaggttgcgaaaccgaagcggcgctggatgagttaaaagtcgaattgatcgaccgt
tttggcctattacccgaaccgacgcgcaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggggcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtcatgatcacgtcatcgatcctatgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcggccgaaaccagcaaa
gacaggctcgctttagtgaaactcttgctcgaacaattatcgcaacatcgtcttggagat
aataaatag
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integrated database retrieval system
