KEGG   PATHWAY: sbq00020
Entry
sbq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbq00020  Citrate cycle (TCA cycle)
sbq00020

Module
sbq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbq00020]
sbq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbq00020]
sbq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbq00020]
sbq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbq00020]
sbq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbq00020]
Other DBs
GO: 0006099
Organism
Saimiri boliviensis boliviensis (Bolivian squirrel monkey) [GN:sbq]
Gene
101029193  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
101051906  ACLY; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
101043917  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
101039325  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
101030647  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
101029012  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
101036463  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
101051785  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X4 [KO:K00030] [EC:1.1.1.41]
101050203  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
101032511  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
101043727  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
101030121  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
101030855  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
101041930  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
101050596  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
101054362  SUCLG1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101035869  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101037863  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101049489  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
101044303  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
101051329  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X2 [KO:K00236]
101052834  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
101028994  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
101048662  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
101040730  MDH1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
101035915  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101036608  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
101027719  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
101035593  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X2 [KO:K01596] [EC:4.1.1.32]
101051150  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
101046119  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
101028429  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
101036488  DLAT; LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbq00010  Glycolysis / Gluconeogenesis
sbq00053  Ascorbate and aldarate metabolism
sbq00061  Fatty acid biosynthesis
sbq00062  Fatty acid elongation
sbq00071  Fatty acid degradation
sbq00190  Oxidative phosphorylation
sbq00220  Arginine biosynthesis
sbq00250  Alanine, aspartate and glutamate metabolism
sbq00280  Valine, leucine and isoleucine degradation
sbq00350  Tyrosine metabolism
sbq00470  D-Amino acid metabolism
sbq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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