Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101050463
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Entry
101050463 CDS
T04350
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101050463 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbq03021
]
101050463 (PCF11)
03019 Messenger RNA biogenesis [BR:
sbq03019
]
101050463 (PCF11)
Transcription machinery [BR:
sbq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101050463 (PCF11)
Messenger RNA biogenesis [BR:
sbq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101050463 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
101050463
NCBI-ProteinID:
XP_010343920
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSAPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSSLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
RISQHSHGKDQSHRKEFLMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSSEKITKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKAAEKKDKDEHMKSSEHRLPGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHIEEFTPSSRE
DRNAKRSTKQDIRDPRRMKKSEEERPQEITNQHSTKSGTEPKENIENWQSSKSAKRWKSG
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLTDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGTAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVSGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN
QTGPYSDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPMAVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVSEVAAQPPLEEEEEQN
EDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPSEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaacatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaggagccttcagcacctggtacggtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactgataaggcagcagttgctggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaagaaacatccagtttaggtcctggatctgcaccatccaaattacatgtttcacag
attccccctatggcagttaaagctcctcatcaggttcctgtgcagtctgagaaaagccgt
ccaggaccatccttacaaattcaggatttgaaaggaactaaccgggatcctcgtctgaac
aggataagccaacattctcatggaaaagatcaaagtcacaggaaagaatttttaatgaac
acattaaaccagtctgatattaagacaagtaaaactataccctctgaaaaactaaattca
tccaagcaggaaaaaagtaaatcaagtgaaaaaataaccaagaaagaacttgaccaatta
gattctaaatcaaaatcaaaatcaaaatcgccgtcacctttgaaaaacaaattatctcac
acaaaagacttgaaaaatcaagaatcggagagtatgaggttgtctgatatgaataagaga
gatccaagactaaaaaagcatcttcaggataagactgatggcaaagatgatgatgtgaaa
gagaagagaaaagctgcagaaaaaaaggataaagatgagcacatgaagtcatctgaacac
agattgcctggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacaata
acagaagagtcagaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatca
agatctcgatcacccaagtctaggtcaccaattatacattccccaaagagaagagataga
cgatcacccaaacgaaggcaaaggagtatgtctccaacatctacacctaaagctggaaag
attcgccaatccggagttaagcagtcacatatagaagagtttacaccatcttctagagaa
gacagaaatgctaagagaagtactaagcaggatattcgggatccaaggcgaatgaaaaag
agtgaagaggagcgaccacaagaaatcacaaatcagcattctacaaagtcaggcactgaa
ccaaaggagaatatagaaaactggcaaagttccaagtctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaggttgatgaacatagtaaacctcctcatctaagg
catagggagagctggtcaagcactaaaggaattttatcacctcgagccccaaagcagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gacttccttgttgttgtacatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttaactgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatcgccattcaatgat
cgttttccactcaagcgacctcgatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggcctggatacaaatcagcgacttacagctttagctgaagacaga
ccgttatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctcgaattgatggacctcctacaccagcttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctttaagatttgaagggcca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtgggg
acacctctgcgatttgagggcccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctagtctgaggtttgaaggatctgcaggtggtttgcgatttgagggaccaggg
ggccagcctgtgggtggtctgaggtttgagggacatcgtggtcaacctgtgggtggtctg
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaagggggtcatggtccatcagggactgcgattagg
tttgatggacctcatggtcagcctggtggtgggatcaggtttgagggccctttgctacag
caaggagttggaatgaggtttgagggcccccatggtcagtcagtatctggtctgagattt
gagggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggatcaggtttgaaggccctttagtccaacaaggaggtggaatgaggtttgag
ggtcctgtaccaggaggtggcctgcgaattgaagggcctctgggtcaaggtggtccaaga
tttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttgcca
agatttgatggattacatggtcagccaggtcctagatttgaaaggactcctggccagcca
ggccctcagaggtttgatggaccacctggacagcaggttcagccaagatttgatggtgta
cctcaaagatttgatggtccacaacatcaacaggcatcaaggtttgatattcctcttggt
cttcaaggcacaagatttgacaatcatccttcacaaaggcttgaatcagtatctttcaat
cagactgggccatatagtgatccacctggcaacgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagtttctctaatccacttaacagagcttctggacactatttt
gatgaaaaaaatcttcagagttctcaatttggaaactttggcaatttacctgctccaatg
gcagtaggaaatattcaggcatctcaacaggttctaagtggtgttgctcagccggtagct
tttggtcaaggacaacagtttttaccagttcatccacaaaatcctggatttgttcagaat
ccttcaggagccctccctaaggcatatcctgataatcatctcagtcaggtggatgtaaat
gaattattttcaaaattgctgaaaacaggaattctcaaattgtctcaacctgattcagct
acaacacaagtaagtgaagtagctgctcagcctccccttgaagaggaggaagaacaaaat
gaagatcaagatgttccagatcttactaattttacagttgaagaattgaaacaacgttat
gatagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgaggttt
acgacatcacagacagatgtatatgcagatcatttggactggcattatcggcaaaataga
actgaaaaggatgttagcagaaaagtcactcatagacgttggtactacagtttaacagac
tggatagaatttgaggagatagctgatctggaagaacgggcaaagagccagttttttgaa
aaggttcatgaggaagttgtactcaaaactcaagaggctgctaaagaaaaagagttccaa
agtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaattt
gaacagtactgggatgaagaagaggaggaatggcatttgaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatcacccagcaagacaccagttgaaaaccccttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaatagataca
ccaccagcttgtacagaggaaagcatagcaacaccctctgaaattaaaacagaaaatgac
acagtcgagtcagtttaa
DBGET
integrated database retrieval system
