Streptomyces broussonetiae: GQF42_37975
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Entry
GQF42_37975 CDS
T07359
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbro
Streptomyces broussonetiae
Pathway
sbro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GQF42_37975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbro03400
]
GQF42_37975
Enzymes [BR:
sbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GQF42_37975
DNA repair and recombination proteins [BR:
sbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GQF42_37975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHA08290
UniProt:
A0A6I6NE23
LinkDB
All DBs
Position
complement(8316380..8317312)
Genome browser
AA seq
310 aa
AA seq
DB search
MSTRASAREEIRVGSRNVPLSNPDKELFPDDGITKAELIDYYRSIAPLMLSHLRGRPLVM
ERYPDGYEGKSFYHKDVPGYFPDWIRTVRVPKQGGSLTMAVCDNTATLVYLANQACITPH
PWLSPADCLDRPDRLVFDLDPPDSTHDGFENVRWGARRLGDLLTELGLRPALMTTGSRGL
HLLVPLDRRTDFETARHFARRVADLLAQRHSDRLTTEARKNSRGGRLYLDVQRNTYAQTS
VAPYAVRARPHAPVATPLEWAELDDPELGPRRWTLRTLSERLDRHANPWKDLSRCRRSLD
RARRHLDDLV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccagggcgagcgcccgggaggagatacgggtcggcagccgcaatgtgccgctg
tcgaacccggacaaggagctgttcccggacgacggcatcaccaaggccgagctgatcgac
tactaccgcagcatcgcacctctgatgctgagccacctcaggggccgacctctggtgatg
gagcgctacccggacgggtacgagggaaagtccttctaccacaaggacgttcccggctat
ttccccgactggatccgcacagtgcgtgtgccgaagcagggcggcagcctcaccatggcc
gtctgtgacaacacggccactctcgtgtacctcgccaaccaggcgtgcatcaccccgcat
ccctggctgagtcccgcggactgcctggaccgccccgaccggctcgtcttcgacctcgac
ccgcctgacagcacgcacgacggcttcgagaacgtccggtggggtgcgcgccgactgggt
gacctgctcaccgagctggggctgcggcccgcgctgatgacgacgggatcacgcggcctg
cacctcctggtgccgctcgaccggcgcacggacttcgaaaccgcccggcacttcgcccgg
cgcgtcgccgacctgctcgcgcagcggcacagcgaccggctgacgaccgaagcacgcaag
aacagccgcgggggccgtctctacctggacgtccagcgcaacacctacgcccagacctcg
gtcgccccctacgccgtacgcgcccgcccgcacgccccggtcgccaccccgctggagtgg
gcggaactcgacgacccggaactgggaccacggcgctggaccctgcgcaccctctccgaa
cgcctggacagacacgcgaacccttggaaggacctgagccgctgccgtcggtccctcgac
agagcgcgacgccacttggacgacctcgtgtga
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