Candidatus Tachikawaea gelatinosa: TGUWTKB_3700 Help Entry TGUWTKB_3700      CDS       T03624                                  Symbol rpoC Name (GenBank) DNA-directed RNA polymerase   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism sbw  Candidatus Tachikawaea gelatinosa Pathway sbw03020   RNA polymerase Brite KEGG Orthology (KO) [BR:sbw00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     TGUWTKB_3700 (rpoC)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:sbw03021]     TGUWTKB_3700 (rpoC)    03400 DNA repair and recombination proteins [BR:sbw03400]     TGUWTKB_3700 (rpoC) Enzymes [BR:sbw01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      TGUWTKB_3700 (rpoC) Transcription machinery [BR:sbw03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      TGUWTKB_3700 (rpoC) DNA repair and recombination proteins [BR:sbw03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       TGUWTKB_3700 (rpoC) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Motif Other DBs NCBI-ProteinID:  BAP58602 UniProt:  A0A090AQI0 LinkDB All DBs Position complement(394850..399085) Genome browser AA seq 1411 aa AA seqDB search MKDLIKFLKAQNKNEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPTAHIWFLKSL PSRIGLLLDMPLRDIERVLYFESYVVINSGMTNLEKCQILTEEQYLDSLEEFGDEFSAKM GAEAIQDLLKNIDLKQESQTLHEELIETNSETKRKKIAKRIKILESFIYSGNKPEWMILA VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ EAVDALLDNGRRGRSITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY LRLHQCGLPKKMALELFKPFIYGKLELRGIATTIKAAKKMVEREDAIVWDVLDEIIKEHP VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKVNAQGEGMILNGSKEAERVYRMH IAELHARVTVRINEYKYIANSKSFLKTKKLVKTTIGRAILWMIVPKGLPYHLVNQTLGKK DISKMLNTCYRILGLKSTVTFADKVMYTGFSYAARSGASVGIDDMVIPHKKTSILFEAEK EVREIQKQFQSGLVTAGERYNKVIDIWASANECVASAMMKNFSNEIVINAKKEKEKQVSF NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA RKGLADTALKTANSGYLTRRLVDVAQDLVVTKDDCGTHEGIMMTPLIEGGDVKESLRERV LGRMTAKIVVHPINHKHVLIERNVLLDEYWCDVLEKNTIDSVFVRSVVSCETSFGVCAYC YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIQVKNKGKI KLINAKSVINSDGKFVITSRNVELKMLDDFGRTKESYKLPYGAIMEKGDGMHSYAGEIIA NWDPHTMPVINEVNGFIKFVDMIDGQSIVRQTDELTGLSSLVILDTSERTALGKDLRPAL KIVNDLEEDICFTGSDMPAQYFLPGKAIVQLENGSKISAGDTLARIPQESVGTKDITGGL PRVADLFEARRPKEPAILAEISGLISFGKETKGKRRLVITPLNNDEPYEEMIPKWRQLNV FEGERVEKGDIISDGPESPHDILRLRGVHAVTRYVVNEVQDVYRFQGVKINDKHIEVIVR QMLRKATVISSGNSSLLEGEQVEVSRVKILNKELKENNQVPITYKRDLLGITKASLATES FISAASFQETTRVLTESAVAGKYDELRGLKENVIVGRLIPAGTGYSYHKNRKKRRLNKEK KSFTKQPITVDEASSNLSELLNANIAIDKPE NT seq 4236 nt NT seq  +upstreamnt  +downstreamnt gtgaaagacttaattaagtttttaaaagcacaaaacaaaaatgaagaatttaatgcaata aaaattgctttagcttcaccagatatgatccgatcttggtcttttggagaagtaaaaaaa ccagaaacaattaattatcgtacttttaaaccagaacgagatggtttattttgtgcaaga atttttggaccagtaaaagattatgaatgtttatgtggaaaatataaaagattaaaacat agaggagtaatttgtgaaaaatgtggggtagaagtaacgcaaacaaaagtacgcagagat cgtatgggacatattgaacttgcttctccaactgctcacatttggtttttaaaatccttg ccctcacgtattggtttattattagatatgccgttacgtgatatagaacgtgttttatat tttgaatcttatgttgtaataaatagtggaatgactaatcttgaaaaatgccaaattctt actgaagaacaatatcttgattctttagaagagtttggtgacgagtttagcgcaaaaatg ggtgctgaagcaatacaagatttattaaaaaatattgatttgaaacaagaatcgcaaact ttacatgaagaacttattgaaactaattcagaaactaaaagaaaaaaaatagctaaacgt atcaaaatattagaatcttttatttattctggaaataaacctgaatggatgattcttgca gttttacctgttcttcctcctgatttaagacctctagttccattagatggaggacgtttt gcaacctctgatcttaacgatctatatagacgcgtaataaatcgtaataatagattaaaa cgtttactagatttagctgcaccagatattatagttcgtaatgagaaacgtatgttacag gaagctgtagatgctttattagataatgggcgtcgtggacgttcaattactggttctaat aagcgacctctaaagtctttagcagatatgattaaaggtaaacaaggaagatttcgtcaa aatttattaggaaaacgtgttgattattcaggacgttctgttattacagttggtccgtat ttacgtttacatcaatgtggtttaccaaaaaaaatggctttagaactttttaaaccattt atttatggaaaacttgaattaagaggtatagctacaactattaaagcagctaaaaaaatg gttgaaagagaagatgcaatagtttgggatgttttggatgaaattattaaagaacatcct gttttgcttaatcgtgctccaactcttcatcgtttaggtatacaagcatttgaaccaatt ttaatagaaggaaaagctatacaacttcatcctttggtatgtgctgcttataacgctgat tttgacggtgatcaaatggccgtccatgttccgttaacattagaagcacaattagaagct cgtgctttaatgatgtctactaataatattctttctccagcaaatggagaacctattatt gtaccatcacaagatgtagtattaggtttgtattatatgacacgtgaaaaagttaatgca caaggagagggtatgatattaaatggatcgaaagaagcagaacgtgtttatcgtatgcat atagctgagttacacgcacgtgttacagtacgtattaatgaatataaatatatagcaaat agtaaatcttttttaaaaacaaaaaaattagtaaaaactactataggtcgtgcaatttta tggatgattgttcctaaaggtttaccatatcatctagtaaatcaaactttaggaaaaaaa gatatttctaaaatgttaaatacttgttatcgtattttaggattaaaatctaccgttact tttgctgataaagtaatgtataccggatttagttacgcagcacgttcaggagcttctgtt ggaatagatgatatggttatacctcataaaaaaacaagtattcttttcgaagctgaaaaa gaagtaagagaaattcaaaaacagtttcaatctggattagtaactgctggtgaaagatat aataaagttattgatatttgggcttctgcaaatgaatgtgtagcatcagcaatgatgaaa aatttttctaacgaaatagtgatcaatgctaaaaaagaaaaagaaaaacaagtttctttt aatagtatatttatgatggcagattctggtgcacgtggttcagctgctcaaattcgtcaa ctagctggaatgcgtggtttaatggcaaaacctgatggatcaattattgaaacaccgatt actgctaattttcgtgaaggattaaacgtcttacaatattttatttcaacacatggtgca agaaaaggattggcagacacagcgttaaaaactgctaattctggttatttaactcgccgt ttagttgatgttgcacaagatttagttgttaccaaagatgattgcggtacccacgaaggc attatgatgacaccgttaattgaaggtggagatgtaaaagaatctttaagagaacgtgtt ttaggaagaatgactgcaaaaattgttgttcatccaattaatcataaacatgttctcatt gaaagaaatgttttattagatgaatactggtgtgatgttttagaaaaaaatactattgat agcgtttttgtaagatcagtagttagttgcgaaactagttttggagtttgtgcttattgt tatggtcgtgatttagcgcgagggcatattattaataaaggtgaagcaataggagtaatc gctgcacaatctattggagaacctggaacacaattaactatgcgtacttttcatatagga ggtgctgcttcaagatctgcggctgaatcaagcattcaagtaaaaaataaagggaaaata aaacttataaatgctaaatcagttatcaattctgatggaaaatttgttattacttctaga aatgttgaattaaaaatgttagatgattttggtagaacaaaagaaagttataaacttcca tatggtgctattatggaaaaaggtgatggaatgcatagttatgcaggtgaaattattgct aattgggatcctcatactatgccagtgattaatgaagtaaacggttttattaaatttgta gatatgattgatggtcaaagtattgtacgtcaaactgatgaattaactggattatcttca ttagttattttagatacatcagaaagaactgctttaggtaaagatcttcgacctgctcta aaaattgttaatgatctggaagaagatatatgttttactggatcagatatgcccgctcaa tattttttacctggaaaagcaattgttcaattagaaaacggttcaaaaattagtgctggt gatacattagcaagaattcctcaagaatcagttggaactaaagatattacaggtggatta ccaagagttgctgatttatttgaagcacgtcgaccaaaagaaccagcaattttagcagaa attagtggtttaatatcttttggaaaagaaacgaaaggaaaaagaagattagttattact ccattgaacaatgatgaaccatatgaagaaatgattccaaaatggcgtcaattaaatgtt tttgaaggggagcgtgtagaaaaaggtgatataatttctgatggaccagaatcacctcat gacattttacgtttaagaggagtacatgcagttacacgatatgttgttaatgaagtacaa gatgtatatcgttttcaaggcgtaaaaataaatgataaacatattgaagtaattgtacgt cagatgttaagaaaagctacagtaattagttcaggtaattctagtttacttgaaggagaa caggtagaagtttctcgcgtaaaaattcttaataaagaacttaaagaaaacaatcaagta ccaatcacttataaacgagatttattaggtattactaaagcatctttagcaactgaatcg tttatttctgcagcgtcatttcaagaaacaactagagttttaactgaatcagcagtagct ggaaaatatgatgagttaagaggtttaaaagaaaacgttattgttggtcgtttaattcct gcaggaacaggatattcatatcataaaaatagaaaaaaacgtagattaaacaaagaaaaa aaatcttttacaaaacaaccaataactgtcgacgaagcatcaagtaatttatctgaattg cttaacgctaatattgctatagataagcctgaataa

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