Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_06915
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Entry
CA265_06915 CDS
T05546
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CA265_06915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbx03400
]
CA265_06915
Enzymes [BR:
sbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CA265_06915
DNA repair and recombination proteins [BR:
sbx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CA265_06915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
GH3
Motif
Other DBs
NCBI-ProteinID:
ARS39396
UniProt:
A0A1X9Z2C3
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All DBs
Position
1718225..1720921
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AA seq
898 aa
AA seq
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MSLKKYVAKRDFSKTTEPKSGKSSDRNKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYKDFEGIIPQGEYGGGTVIVWDEGTYEPIETIKGKKAQE
KHLLGQLKDGSLKIKLNGEKLHGEFALVKTHGMGENGWLLIKHKDDYASVKDITKEDKSV
LSGKTIEKMEKTSDKVWKEGKEQDLKTEKKSPKGKVKKETKAVGDDVVVDVKAILKKAPK
TAIPKGIKPMLATLVDEPFDDPDWQYEVKWDGYRALAFVNKGKVDLLSRNNKSFNEKFYP
IYDLLLGWKMNAVLDGEILVLNSKGVSNFGSLQNWRSEADGELVFYVFDILWYDGKNLME
LPLYQRQAILNEVLPTDDDRVRLGKVFKASGVDFFDAASRMGLEGIIAKKTDSIYATDRR
SKEWLKIKVQKRQEVVIAGFTKNADTAKSFSSLLLGVYEKGKLQYVGKVGTGFSDKLQKT
MMEQFKPIIIDKSPFESIPDVNKPSRFRPNPPKAQATWLKPELVCEVAFTEVTEDGVFRH
PSFQGMREDKKAKEVVREAEMPTDQIVDDTKEKSPHAAAIKAPKGKEPKTLLNPKDETQV
RKVKGHELKFTNLSKIYWPEDKVTKRDMFNYYYQVAEYIMPYLKDRPQSLNRFPGGIHGP
SFYQKDVKGKAPDWAETFPYENGEGEKKEYLVGTDEASLLWMASLGCIEMNPWFSRVQSP
DNPDYCVIDLDPDKHTFDQVVQAALETKKVLDAINVPGYCKTSGSTGMHIYIPLNAKYTY
EQSQMFAKIVVNLVHNQIPEYTSLERMVAARKGKMYLDFLQNRPGATIAGPYSLRPKIGA
TVSMPLHWDEVKPGLKMKDFNIFNTIDRLKVEGDLFKGVLGKGIDLMKAIDKAKSVFG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgaaaaagtatgttgccaaacgcgatttctccaaaactaccgaaccaaaatcg
ggcaaaagcagcgatcggaataaattacattttgtaatccaaaaacatgatgcttcgcgg
ctgcattacgatttcagactcgaaatggaaggtgtgctaaaaagctgggccgtaccgaaa
ggcccctcaaccgatccaaaaaccaaacgtctggccatgatggtagaggatcatccatac
gattataaagattttgaaggcattatcccacaaggcgaatacggtggcggaaccgttatt
gtatgggatgaaggaacttatgagcctattgaaacgattaagggcaaaaaagcacaggaa
aaacatttattaggtcagttaaaagatggttctttaaaaatcaagctcaacggagaaaaa
cttcatggcgagtttgcacttgtgaaaacccatgggatgggcgaaaacggctggctgtta
atcaaacataaagatgattatgcttctgtaaaagacattaccaaagaagataaatcggtg
ctttctggaaaaacaatcgaaaagatggaaaaaacatccgataaggtttggaaagaaggg
aaggagcaggatttaaaaactgaaaaaaaaagcccgaaaggaaaagtaaagaaagaaacc
aaagcggtgggtgatgacgtcgtggtagatgtaaaagccatactgaagaaagcccctaaa
accgctattccaaaaggcataaaacccatgctggccaccttggttgacgaacctttcgac
gatcctgattggcaatatgaggtaaaatgggatggttatcgtgccctggcctttgtcaat
aaaggaaaggttgatctgttgtcaagaaataataaatcctttaacgaaaaattttatccc
atttacgatctgcttttgggctggaaaatgaatgcggtattggatggtgagattttggtt
ttaaatagcaaaggtgtgtctaattttggctcgctgcagaactggcgaagcgaagctgac
ggagaacttgttttttatgtgttcgatattctctggtacgatggtaaaaacctgatggaa
ctgccactttaccagcgacaagccatattgaacgaggtactgccaactgatgatgaccgt
gtgcgccttgggaaagtttttaaagccagtggagtagacttttttgatgcggccagcaga
atgggcttggaaggcattattgccaaaaaaacggatagtatttatgcaacagaccggaga
tcgaaagaatggctgaaaattaaggtacagaagcggcaggaagtggttattgccggtttc
accaaaaacgccgatactgctaaatctttcagctctttactattaggcgtgtatgaaaag
ggaaaactacaatatgtgggcaaagtagggactggtttttcagataaacttcagaaaacc
atgatggagcagtttaagccgattattatcgataaaagccccttcgagagtattcctgat
gtaaataaaccctcccgcttcaggccaaatccaccaaaagcacaagccacctggttaaag
ccagaattggtatgcgaggttgcttttactgaagtaacggaagatggtgttttccgtcac
ccgtctttccagggcatgcgtgaagataaaaaagccaaagaagtggtaagggaagccgaa
atgcctacagatcaaattgtcgacgacactaaagagaaaagtccccatgcagcggcaata
aaagctccaaaaggtaaagaacctaaaactttgttaaatccgaaagatgaaacacaggtc
aggaaagttaaaggccacgaacttaaattcaccaacttaagtaaaatatattggcccgaa
gataaggtaaccaaaagagatatgtttaactactattaccaggttgctgaatatataatg
ccttacctgaaagaccggcctcaatcgcttaaccgctttccgggtggaatacatggtccg
agtttttaccagaaagatgtaaagggaaaagcaccagactgggccgaaactttcccctat
gaaaatggcgaaggtgaaaaaaaagaatacctggtgggaacggatgaagcttcattactc
tggatggccagtttaggctgtatagaaatgaatccctggtttagccgggtacaaagtccc
gataatccagattactgtgtaattgatttagatcccgataagcatacttttgatcaggtg
gtacaggccgctctggaaactaaaaaagtattggatgccataaatgttcccggttattgt
aaaacctcaggttcaaccggaatgcatatttacattcccttaaatgccaaatatacttat
gagcaaagtcagatgtttgctaaaatagtggtcaacctggtgcacaatcaaatccctgaa
tatacttcgctcgagcggatggtggcggccagaaaaggtaaaatgtatttagattttttg
cagaataggccaggggcaaccattgccggaccttattcattgcgcccgaaaattggtgca
accgtatcaatgcctctgcattgggatgaagttaaacctggcttgaaaatgaaagatttt
aatatttttaataccatcgatcgcttaaaagtggagggagatttgtttaaaggtgtactg
ggcaagggaattgatttaatgaaggccattgataaagccaaaagtgtttttggataa
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