Salmonella bongori N268-08: A464_2554
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Entry
A464_2554 CDS
T02733
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbz
Salmonella bongori N268-08
Pathway
sbz03030
DNA replication
sbz03410
Base excision repair
sbz03420
Nucleotide excision repair
sbz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A464_2554
03410 Base excision repair
A464_2554
03420 Nucleotide excision repair
A464_2554
03430 Mismatch repair
A464_2554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbz03032
]
A464_2554
03400 DNA repair and recombination proteins [BR:
sbz03400
]
A464_2554
Enzymes [BR:
sbz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A464_2554
DNA replication proteins [BR:
sbz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A464_2554
DNA repair and recombination proteins [BR:
sbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A464_2554
NER (nucleotide excision repair)
GGR (global genome repair) factors
A464_2554
MMR (mismatch excision repair)
DNA ligase
A464_2554
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A464_2554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AGR59739
UniProt:
S5MYP8
LinkDB
All DBs
Position
complement(2537359..2539374)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITADSPTQ
RVGAAPLTAFRQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSKEKVTWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITANVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHKVEADRPTLGFDIDGVVIKVNSLVLQEQL
GFVARAPRWAVAFKFPAQEQMTFVREVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPDATRPVVFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ASIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaattgacagaactgcgaaccacgcttcgccatcatgagtat
ctgtatcatgtgatggatgcaccagagattcccgacgccgaatatgaccgcctgatgcgg
gagctgcgggagttggaggcgcagcgtccggatctgattacggcggattcgcccacgcaa
cgcgttggcgcggcgccgctgacggcattcaggcagattcgccatgaagtgccgatgctg
tcgcttgataacgtgtttgatgaagagagctttctggcgtttaacaaacgggtacaggat
cgcttaaaaagtaaggaaaaagtgacctggtgctgtgagctgaagctggatggtctggcg
gttagcattctgtatgaaaacggcgttctggtaagggctgcgacgcgtggcgatggtacc
accggtgaggatattaccgcgaacgtgcgcacgattcgcgctattccgttaaaacttcac
ggcgataacattccggcgcgccttgaggttcgcggagaggtatttttaccgcaggccggg
tttgaaaagatcaatgacgaagcgcgtcgtactggcggcaaagtgtttgccaacccgcgt
aacgcggcggcgggttcactgcgtcaactcgacccgcgcattaccgcgaagcgaccgctg
acgttcttctgctacggcgtcggtatccttgaaggcggcgagttgccggatacgcatctg
gggcgtttgctgcaatttaaagcgtggggactaccggtcagcgatcgcgtgacgctgtgc
gattctccgcaagcggtgctggatttttaccataaagtcgaggcagaccgcccgacgctg
ggctttgatatcgacggcgtggtcattaaagtcaactcgctggtcttgcaggaacaactt
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaatttccagcccaggagcag
atgacttttgtacgcgaggttgagtttcaggttggacgcaccggggcgattacgccggta
gcgcgtctggaaccggttcaggtagcaggtgtattagtcagtaacgccacgctgcataat
gccgatgaaattgagcgtcttggcttgcgcattggcgataaggtggttatccgtagggct
ggggatgttattccccaggtggtgaacgtagtcctttcggaacgtcctgacgcgacgcgt
ccggttgtgtttccggcgcattgtccggtatgcgggtctgacgtagaacgcgttgaaggc
gaggccgttacccgttgtactggcggactgatttgtggcgcgcagcgtaaagagtcgctc
aaacactttgtgtcgcgccgggcgatggacgtagacgggatgggagataagattatcgac
caattggtggaaagggagtatgtccatacacccgcggatttattccgtctcacggcgggt
aaactgaccggcctggaccgaatggggccaaagtctgcgcaaaatgtcgttaacgcgttg
gaaaaagccaaagaaacgacctttgcccgctttctttatgcattgggtattcgagaagtc
ggtgaagcaacggcggcagggctggcggcgtatttcggtacgctggaggcgctgcaggcc
gcctctattgacgaattgcaaaaagtgcctgatgtaggaattgtagtcgctacgcacgtc
tttaacttttttgccgaagagagcaatcgtgacgtgatcggtcagctactggcggaaggg
gttcactggccagcgccggtagtgattaatgcgcaagagatcgacagtccgtttgccggt
aaaactgtggtgctaaccggtagcttaagccagatgtcccgtgatgacgctaaagcgcgt
ttagtggaactgggcgcgaaagtggcaggtagcgtatcgaagaaaaccgatctggtgatt
gcgggtgaagcggcgggttccaaacttgctaaagcgcaggaactgggcatcaatgtcatt
gatgaagcggaaatgctccgtttgctgggcgtctga
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integrated database retrieval system
