Shewanella carassii: TUM17387_00930
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Entry
TUM17387_00930 CDS
T07543
Name
(GenBank) GlyGly-CTERM sorting domain-containing protein
Organism
scaa
Shewanella carassii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_5
DUF4347
fn3
Cadherin_4
Laminin_G_3
OMP_b-brl
He_PIG
OmpA_membrane
Motif
Other DBs
NCBI-ProteinID:
BCV64734
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All DBs
Position
complement(107419..113754)
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AA seq
2111 aa
AA seq
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MVDATISQYQTLLEQASTTALTARPITELTELNALIVQDKKYSGLHLITHGQSGEILLAG
HKLAPRELAIQLDQLLLPGAPLYLYACNLAQDKKGQAFVDNLASILARPVLASINATGNK
RLGGDWQLEYSTSSAIAARTLFSGDVRGFNTLLSNTAYEFSDGDAVTLTNAAAALSNDNT
FTLELWANLPSVSGVINLMDITGTADAGGFVLVNGLLTVDLINDFGNLTQSNPIPLSINT
WYHFAFVFDSGQWSFYVNGQSYGSGIPDNGGNNTVPNYQAANVNNLVAGIQNNTAVSNFI
GKLDEVRLWSTARTQTEIQNNRQLELAGNETGLIGYWKLNETSGTVVNDSQTNGSILQGS
SSGVTLAVAGAFSVNQSPTDISLSNNSVSQSGGSNAVVGTLTTTDADVGDSFSYALIAGS
GDTNNSNFNLSGDSLRANNASTLVGGSYSIRVQTTDSGNATFEKAFSITVVDDLAPEVTG
MTVDGSPADTATSISYTVSFNELANNISTDDFNLTNTGSAAGNIASVSASSGTSVTVTIN
NISGNGSLRLDLKAATNISDAQANTGPAAYTSGDVHTVAVPTVPGAPIIGTASALDSQAV
VNFSAPASDGGSAITSYQVTSSPGGITASGANSPIGVTGLINGTSYTFTVQAINAVGTSS
PSAPSNSVVPKANQTISFSNPGAQDFGSAPTLTATASSGLAPVFSSTTTGVCSITTTGTL
SFVSAGSCSINADQAGDSSYNAAPTVTQSFTVNAVVPGAPTSVNAVASDASATVSFSAPA
STGGAAISGYTVTSSPGGLTASGAGSPLTVSGLSNGTDYSFTVIASNTAGTGPASSPSNT
VTPKANQSISFSNPGAQSFGSAPTLTATASSGLTPVFSSTTTGVCTITASGTLTFVTTGN
CSIDADQPGDSSYNAAPTVTQSFTVNAVVPGAPTSVNAVASDASATVSFAAPVSSGGAAI
SSYTVTSSPGGLTASGAGSPLTVIGLSNGTDYSFTVSASNIAGTGPASSPSNTVTPEPDN
KAPSISGTPVGSVDQDSYYSFIPTATDPDQDPLTFSISNKPAWASFNTASGELSGTPLRE
HVGMSNNIIIRVSDGALSTDLAPFSVEVKAVNQAPQANHDRITQAFSQENSYLLDVLAND
SDPDDDPLTIVDISTSLGTATVLGDKLQLTVPENFNGQVRLSYSITDGEFYDSAKVSFSI
EGSNPEAPVINIPADVTANATGLFTRVNLGRVGAIDSDDNPIPVSLLNGFPFFAPGQHLA
YWKTTDGKGVSATASQLITVYPRINLGASKTVANFTQVQVPVLLNGSAPEYPMEIRYSVS
GDAIAGQDHNLASGSLLLSQGMSTSLEFNVFADLTAGQQKSLTITLDGDQNPGHNAATEI
RISNNNLAPNLSLSASQQGEMRSSVSSSDGLVTVTAEVADPNPADNISLSWSSEPAMTNL
STSANEFTFDPAVLAPGIVTLTLNAMDDGSPQLGSSKSLKLLLLAQLPTLGETDANNNRL
PDSAEGYGDPDGNGIPAYLQGDHPCNVIPEQLSRPNSYLAEAQPGICSRKGLLGLQRLEN
GIELEDGSMLPDDSEGKIVGGLFDFELEGSEYGGRVSIVIPQVQAIPAQAQYRKYVASGW
QEFVTDANNQVFSSAGEPGYCPPMGDASWQSGLTEGHWCVQLLIQDGGPNDGDGQANGTI
VDPGGVAVKLSANQAPIAQADSFSLPWNQPHLLDVLANDNDADNDSLYLVQASVSIGEIS
VSDDKLSLMYTPPEDFIGNAQLSYTVSDGMGGTAMSHAELVVFYNRAPVVNDSSASTDDR
TAIELDVLSTASDPDDDSLTLESAVAQSGSVSITTSQTLSYQPKTGFAGTDIISFSVSDG
NGASATAQVVVTVTAYQEVVVENRSSGGAVAPWALALMLLMAGFRRLSLRLASLPLLLLL
AIGVSFNAQARWSVNLNLGYSHARLSESDINQALPAEVKLTELDKDDFAWSVALNYQAND
AWALQFGYLDLGETSLMLGGSTLDPQGLQQSLANLGPQLASGVTAGAEYRFWRYHDWSFS
LNGGIFIWESDFSSQWLQQELRYDDSGVDFYWGLGGQYQLSEQWAIRADYRRYMLDRNQV
DGVFLGLEFFF
NT seq
6336 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgccacaatctctcaatatcaaaccttgctggaacaggcatctaccacggcc
ctcaccgctagacccattaccgaactgaccgaactcaacgccttgatagtccaagacaag
aagtactcgggtttacacttgatcactcacggtcaaagcggcgaaatactgttggcgggc
cacaagttggcgccacgggaactggccatccagttggatcaactgctactgccgggtgcc
cctctctatctgtacgcctgtaacttggctcaggataaaaagggccaagcctttgtcgat
aatctggcctcgattttagcccgccccgtattggcctcaatcaacgccacaggcaacaag
cgtcttggcggtgattggcaactcgaatactccacatcctcggccattgcagccaggaca
ttgttttccggtgacgtgagagggtttaatacactattgtccaacacagcttacgaattc
tccgatggggatgcggttaccctcaccaatgccgccgccgcgctatcgaatgacaacact
ttcaccctggagttgtgggccaaccttcccagcgtttccggcgttatcaatctgatggat
attaccggtactgccgacgcgggcggctttgttctcgtcaatggcctattgacggtggat
ttaattaacgatttcggtaacttaacccagagcaatcctattccgctcagtatcaacact
tggtatcacttcgcctttgtcttcgacagcggtcaatggagtttttatgtcaatggccaa
tcctatggtagtggcatcccagacaatggtggcaataacacagtgccgaattatcaagcg
gcaaacgtcaacaacctggtcgccggcattcaaaataatactgcggtaagtaactttatc
ggtaaattggatgaagtccgcctttggagcacggcgcggactcaaaccgaaattcaaaat
aaccgccagctcgagctggcgggcaatgaaaccggcttgattggctactggaaactcaac
gaaaccagcggcacagttgtcaatgacagccaaaccaatggttccatactccagggaagc
agcagtggtgttacattagctgtcgccggggcctttagcgtcaatcaaagcccaacagat
atctcgctttccaacaactcagtcagccaaagcggcggcagcaatgctgtggtgggcacc
ctgacaaccacggatgccgatgttggtgacagtttcagttatgccttgattgccggtagt
ggtgacaccaacaatagcaacttcaatctcagtggtgattccctcagggccaacaatgcc
tccaccttggttggtggtagttatagcatccgggtgcagacgacagattcaggcaatgcc
acatttgaaaaagcctttagcatcacagtggtggatgaccttgctccggaagtgaccggc
atgactgtcgatggctcacccgcagataccgcaactagcatcagttacacagttagtttc
aatgaattggccaataatatttcgaccgacgactttaacctgaccaacacgggctctgcc
gcaggcaatattgcgtcggtatccgccagctcaggcaccagtgttactgtcactatcaac
aatatcagcgggaatggttcgctgcgcctggatctgaaagcagcaaccaacatcagcgat
gctcaggccaacacaggtccggcagcctacacctctggcgatgttcatactgttgccgtc
ccaactgttcccggcgcccccatcataggcacggcttcggccttggatagccaagccgtg
gtcaacttctcggcgccagcgagtgatggtggttctgcgattacctcataccaagtgact
tcatctccaggcgggatcaccgccagtggcgccaactcgccgataggggttacaggcctg
atcaacggcacaagttatacctttaccgtgcaggccatcaatgccgtgggtacaagctcg
ccatccgcaccatccaactcggtagtcccaaaggcaaaccagaccatcagcttcagcaac
ccgggggcgcaggactttggcagcgcgccaacccttaccgccaccgccagttcagggttg
gcgcctgtgttcagctccacgaccacaggggtctgtagcatcacaactaccggcacactc
agctttgtcagtgcgggcagttgcagcattaacgccgaccaagccggggacagcagctac
aatgcggcgccaaccgtgacccagagctttacggtcaatgccgtggtgcccggggcgccc
acgtccgtcaacgccgttgcctctgatgccagcgccacagtcagtttcagtgccccggca
agtaccggcggcgcggcgatcagcggctataccgtcacctcaagcccgggtggccttacc
gccagcggcgccggttcgccactgacagttagcggcctgagcaacggcaccgactatagc
tttactgtcatcgccagcaacacagcgggtacgggcccggcctcaagcccctccaatacg
gtaacccccaaggccaaccagagcatcagcttcagcaacccgggggcgcagagctttggc
agcgcgccaacccttaccgctaccgccagctcaggactgacgcctgtgttcagctccacg
accactggggtctgtaccatcacggcctccggcaccttaacctttgtcaccacgggtaat
tgcagtatcgatgccgatcagcccggagacagcagctacaatgctgcgccaactgtgacc
cagagctttacggtcaatgccgtggtgccaggagcgcccacgtccgtcaacgccgttgcc
tctgatgccagtgccacagtcagtttcgcagcccccgtcagcagtggcggcgccgcgatc
agcagctataccgtcacctcaagcccaggcggcctcaccgccagcggcgccggatcgccc
ctgacggtcattggcctgagcaatggcaccgactacagctttactgtcagcgccagcaac
atagcaggcacaggcccggcctcgagcccctccaatactgtaaccccggagccggataac
aaggcccccagtatttcaggcactccagtcggcagcgtagatcaggatagttattacagc
tttatccccaccgccacagatccggatcaagatcctctgacgttcagcatcagcaacaaa
ccggcctgggccagtttcaacacggcaagcggcgagctcagtggtactccactgcgggag
catgtaggcatgagtaacaacatcattattcgagtctcggatggtgcgctcagtacagat
ttggctccctttagtgtggaagtaaaggctgtcaatcaagcgccacaggccaaccacgac
cggataacccaagccttcagccaggaaaatagttatttgctcgatgtactggccaacgac
agtgacccagatgacgatccactgacgattgtggatatcagcaccagcctgggcactgct
actgtactgggagataagctgcaactgacagtgccggaaaacttcaatggtcaggtgcga
ctcagctacagcatcacggacggagagttttatgacagtgccaaggtgagcttcagcata
gaaggcagtaatccagaagcccccgtcatcaatatcccggccgatgtcacagccaacgcc
acaggtctgtttacccgggtaaacttgggtcgggtcggcgccatcgacagcgatgacaac
cccattccggtatccttgttgaacggcttcccgttttttgctcccggccaacatttggct
tactggaaaaccacagatggtaagggggtaagtgccacagcgtcgcagttgattaccgtg
taccccaggattaacctgggagcctcgaaaactgtcgccaacttcactcaagtgcaggtg
ccggttttactcaacggctcggcccccgagtatccgatggaaatccgctacagtgtcagc
ggcgatgcgattgcaggtcaagaccataaccttgcaagcggaagcctgctcttgagtcag
ggaatgtccaccagcctggagttcaatgtttttgccgacttgaccgccgggcaacaaaaa
tcgctgacaatcaccctggacggcgaccaaaaccccggacacaacgccgcaactgaaata
cgcatcagtaacaataatctggcgcccaacctcagcttgagcgccagtcaacagggtgaa
atgcgctccagtgtcagcagctcggatggcttggtaacggtaacggcagaagtcgctgac
cccaacccggcagacaacatcagcctcagttggtccagcgagccagccatgacaaacctc
tcgacctcagcaaacgagttcacctttgaccccgcagtgctggctccagggattgtgacg
ctgacattgaacgccatggacgatggttccccccaactgggaagcagcaagagtctcaag
ctattgctgctggcacagctaccgactcttggggaaacagacgccaacaacaaccgttta
ccggatagtgccgaaggctatggcgatccggacggcaatggtattccggcctatctgcag
ggcgatcacccttgtaatgtgatccccgaacagctcagccgccccaatagctacctggcc
gaggcgcaacccggcatctgctcccgtaaggggctgctaggtctgcagcggctggagaac
ggtattgagctggaagatggttcaatgttgccagatgacagtgaagggaaaattgtcgga
ggtttattcgacttcgaactcgagggcagtgaatatggcggcagagtcagcatagtgatc
ccgcaagttcaggcgataccggcacaagctcaataccgtaaatatgtcgcttccggctgg
caggagtttgtaacagatgccaacaatcaggtatttagcagcgcgggagaacccggatat
tgtccaccaatgggcgatgccagctggcagagtggcctcactgaaggtcattggtgtgtg
caactgcttattcaggatggtggccccaacgacggtgacggccaagccaatggcaccata
gtcgacccgggcggcgttgccgtgaagctatcagccaaccaagcacccatcgcccaggct
gacagctttagtttgccatggaatcagccacatctgctggacgtactggccaacgataat
gatgccgataacgacagcctctatctggtgcaggccagtgtctctatcggtgagatcagt
gtcagtgacgacaagctcagtctgatgtacacgccgccggaagactttatcggcaacgca
cagctgagttataccgtcagcgacggcatgggtggtacggcaatgagccatgcagagctg
gttgtcttttacaacagggcaccagtggttaatgacagcagcgccagcacggacgacagg
acggcgatagagctggatgtattgagcactgccagtgacccggatgacgacagcctgaca
ctggaaagcgctgtggctcaatccggtagcgtcagcatcaccacatcacagacgctgagc
tatcaacctaagaccggctttgcgggcacagacatcatcagcttcagtgtcagtgatggc
aacggcgcctcggcaaccgctcaggtagtggtgacggtcacagcctatcaagaggttgtg
gtggaaaaccgctcttccggcggggcggtcgccccctgggccttggcactaatgctgtta
atggcaggattcaggcgcttaagcctgcgtttggcaagcctgccgctgttgctgctactg
gcaattggggtcagtttcaatgcccaggcgcgctggtctgtgaacctcaacttgggttac
agccatgcccgcctctcggagtcggatatcaaccaggccttaccggcagaggtcaaactg
acggagttggacaaagatgatttcgcctggtctgtggcgctgaactaccaggctaatgat
gcctgggcgctgcagtttggctatcttgatttgggcgaaacctcactcatgctggggggc
agcacactcgacccacagggcttgcagcaatcacttgccaaccttgggccgcaactggcc
tccggggtaactgccggagccgaataccgcttttggcgataccacgactggtctttcagc
ctcaacggcgggatatttatctgggagagcgacttcagcagccagtggctacagcaagag
ttgcgttatgacgactctggcgtcgacttctactggggtctgggtggccaatatcaactc
tccgaacagtgggcgatcagagccgattaccgccgttatatgttggacagaaatcaggta
gacggtgtctttcttggtctggagttctttttctga
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