Sphingomonas cannabina: LZK98_10460
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Entry
LZK98_10460 CDS
T08607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LZK98_10460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_10460 (mfd)
Enzymes [BR:
scab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZK98_10460 (mfd)
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LZK98_10460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UIJ43526
LinkDB
All DBs
Position
complement(2229894..2233349)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSDLNKILSARSPLTLAGVATGFQPVLLADLARAAKGGAVFIVPDEAAMREVAATAPFFA
PELEILTFPAWDCLPYDRASPTLRMMSERLATLHALQQPAKAPRLLVTTANAAAQRTLTP
FRIRQLVARLAPGERISLDRLTALLQANGYVRTETVADAGEFAVRGGLVDLFPSGAEQGL
RLDFFGDEIETVRTFDPATQRTTGTVPGFTLLPASEALLDEDSIKRFRTRYREKFGATAT
GDPLYEAVSDGRRLAGMEHWLPLFEERLETLFDHLPDGAVVVRDTGVSGAAEARFEAIAD
YHANRMRAAGAEPGSYRPLAPDALYLTSEEWAEALKATPAHVATPFHEPESATVLEFNVD
GPRDFAPERSGGKNVYEAVVAHLANVKAAGRKTVLASYSQGSRERLKGLLEDHDLKGLRL
VDSWQEAQAAGDKGTALIVLPLDHGFTAPDVALLTEQDMLGDRLVRRQKRRKSADAFLAE
LATLSPGDLVVHVDHGIGRYEGLTQIPVQRAPHDCVALTYAGGDKLYVPVENLEVLSRYG
SSEEGAALDRLGGEAWQRRKARMKERIREIAGELIKTAAERALRPAEVAEPDATGFATFV
DRFPYQETDDQDRAIADALEDLSAGKPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVAV
VCPTTLLARQHYNNFRERFEGFPIEIGRLSRLVPANEAKAVKEGLTSGKIDIVVGTHALL
AKGIEFKRLGLVIVDEEQRFGVTHKERLKALKTDVHVLTLTATPIPRTLQMAMSGLRELS
VIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFVVTPRIADLPDIEEFLREAVP
EVRYVVAHGQMSPTEVEERMSAFYDKKFEVLVSTTIIESGIDIPSANTMIVNRADRFGLA
QLYQLRGRVGRAKTRAYAYLTTPPERLMTEAAEKRLKVLSDLESLGAGFQLASHDLDIRG
AGNLLGDEQSGHIKEVGYELYQSMLEEAILEARAGGALQRPTDFSPQITIDAPILIPDVY
VPDLDLRMGLYRRLNEIDEVAGLEAFAAEMIDRFGKLPDETENLLRLMEIKLNAKHACVA
KIDVGPKGALVSFHEDRFPNIDGLLAYVARLGDTAKLRPDHRLVINRAWADPKARLNGAL
QLSRGLAKAAG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctcaataaaatcctctccgccagatcccccctcaccctcgccggcgtggcg
accgggttccagccggtgctgctcgccgatctcgcccgcgcggccaagggcggtgcggtg
ttcatcgtccccgacgaagcggcgatgcgcgaggtcgcggcaaccgcgcccttcttcgcg
ccggagctggagatactgaccttcccggcctgggactgcctgccctacgaccgcgcctcg
ccgacgctgaggatgatgtcggagcggctggcgacgctccacgcgctccagcagccggcg
aaggcgccccgcctcctcgtcaccaccgccaacgccgccgcccagcgcaccctcaccccg
ttccgcatccgccagctcgtcgccaggcttgccccaggcgaacgcatctcgctcgaccgc
ctgaccgccctcctccaggctaacggctatgtccgcaccgaaaccgtcgcggacgcgggc
gagttcgccgtccgcggcggcctggtcgacctcttcccctcgggcgccgagcagggcctg
cgcctcgatttcttcggcgacgagatcgagacggtgcgcaccttcgatcccgccacgcag
cgcaccaccggcaccgtcccgggcttcaccctcctccccgcctccgaagcgctgctcgac
gaggactcgatcaagcgcttccgcacccgctaccgcgagaagttcggcgccaccgccacc
ggcgacccgctctacgaggcggtgagcgacggccgccgcctcgccggcatggagcattgg
ctgccgctgttcgaggagcggctggagacgctgttcgatcatctgccggacggcgccgtc
gtggtccgcgacaccggcgtttccggcgccgccgaagcgcgattcgaggcgatcgccgat
tatcatgccaatcgtatgcgcgccgccggcgccgagccaggcagctaccgcccgctcgct
cccgacgcgctgtacctgacgtcggaggaatgggccgaggcgctgaaagccacgcccgcg
catgtcgccacccccttccacgagcccgagagcgcgaccgtcctcgaattcaacgtcgac
ggcccccgcgacttcgcgcccgagcggtcgggcggcaagaatgtctacgaggcggtcgtc
gcccacctcgccaatgtgaaagcggcgggccgcaagacggtcctcgccagctattcccag
ggttcgcgcgagcgcctcaaggggctgcttgaagaccatgatctcaagggcctccgcctc
gtcgacagctggcaggaagcgcaggcggcgggcgacaagggcaccgccctgatcgtcctc
ccgctcgaccacggcttcaccgcgcccgatgtcgcgctactcaccgaacaggacatgctc
ggcgaccgcctcgtccgccggcagaagcgccgcaagtcggccgacgccttcctcgccgag
ctcgccacgctgtcgcccggcgacctcgtcgtccacgtcgaccatggcatcggccgttac
gaagggctgacgcagatcccggtgcaacgggcgccgcacgattgcgtcgcgctcacctat
gccggcggcgacaagctctacgtgccggtcgagaacctcgaggtgctgagccgctacggc
tccagcgaagaaggcgccgccctcgaccgcctcggcggcgaggcgtggcagcgccgcaag
gcgcggatgaaggagcgcatccgcgagatcgcgggcgagctcatcaagaccgccgccgaa
cgcgcgctgcgccccgccgaggtcgccgagcccgacgccaccggcttcgcgaccttcgtc
gaccgcttcccctatcaggagacggacgaccaggaccgcgccatcgccgatgcgctggaa
gacctgtccgccggcaagccgatggaccggctgatcgtcggcgacgtcggcttcggcaag
accgaggtcgcgctgcgcgccgccttcgtcgcggcgatggcgggaatgcaggtggcggtg
gtgtgcccgaccactttgctcgcccgccagcactacaacaacttccgcgaacgcttcgaa
ggcttcccgatcgagatcggccgcctctcccgcctcgtccccgccaatgaggccaaggcg
gtcaaggaaggactcacctcgggcaagatcgacatcgtcgtcggcacccatgcgctcctc
gccaagggcatcgagttcaagcggctcggtctcgtcatcgtcgacgaggagcagcgcttc
ggcgtcacccacaaggaacggctgaaggcgctcaagaccgacgtccacgtcctgaccctc
accgccaccccgatcccgcgcaccctgcagatggcgatgtccggcctgcgtgagctgtcg
gtgatccagaccccgccggtcgatcgcctcgcggtgcgcacctatgtcatgccctgggac
ccggtcgtgctgcgcgaggcgctgctgcgcgaacattatcgcggcggccagagcttcgtc
gtcaccccgcgcatcgccgacctgcccgacatcgaggagttcctgcgcgaggcggtgcct
gaggtccgctacgtcgtcgcccatggccagatgtccccgaccgaggtcgaggagcggatg
tcggccttctacgacaagaagttcgaggtgctggtctcgaccaccatcatcgagagcggg
atcgacatcccctccgccaacacgatgatcgtcaaccgtgccgaccgcttcggcctcgcc
cagctctatcagctccgcggccgcgtcggccgggcgaaaacgcgcgcctacgcctatctc
accacgccgcccgaacggctgatgaccgaggcggcggaaaagcggctcaaggtgctctcc
gacctcgaatcgctcggcgccggtttccagctcgccagccacgatctcgacatccgcggc
gccggcaacctgctcggcgacgagcagtccggccatatcaaggaggtcggctacgaactc
taccagtcgatgctggaggaggcgatcctcgaagcccgcgccggcggagcgctccagcgc
cccaccgatttcagcccccagatcaccatcgacgcgccgatcctgattccggacgtctac
gtccccgatctcgacctgcgcatgggcctctaccgccgcctcaacgagatcgacgaggtc
gccgggctggaggcgttcgccgccgagatgatcgaccgcttcggcaaactccccgacgag
accgagaacctgctgcgcctcatggagatcaagctcaacgccaagcacgcctgcgtcgcc
aagatcgacgtcggccccaagggcgcgctggtgagcttccacgaggacaggttccccaac
atcgacggcctgctcgcctatgtcgcgcgcctcggcgacaccgcaaagctgcgccccgat
catcgcctcgttatcaaccgtgcctgggccgacccgaaggcgcggctcaacggcgcgctc
cagctctcgcgcgggctggcgaaggcggcgggttag
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integrated database retrieval system
