Streptomyces cadmiisoli: DN051_23015
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Entry
DN051_23015 CDS
T07301
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scad
Streptomyces cadmiisoli
Pathway
scad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DN051_23015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scad03400
]
DN051_23015 (mfd)
Enzymes [BR:
scad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DN051_23015 (mfd)
DNA repair and recombination proteins [BR:
scad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DN051_23015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWW39174
UniProt:
A0A2Z4J2C7
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All DBs
Position
5280583..5284116
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAIKASTDGNRMHVDLVGPQAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRTLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLVHPSADDP
ETGPVSVVVAPVRSVLQPQVKGLGELEPVALRSGQTADLNQIVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAAHGLWAPPCRELL
LTDDVRSRARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDASTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTEAHGPAA
RTVEVLGGEGIAARLDTDLGEISPSVVHVACGSIDNGFVDPALRLAVLTETDLSGQKAAG
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGDRYAQFPVRVKALSRFQTDTEAKA
VLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIIPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACDVGEIVLQGNNIRFAPVDLRESQELRLKRLYPGTVVKPAV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgcactcgccgaagcgatc
aaggcgtccaccgacggcaaccggatgcacgtcgatctggtcggcccccaggcggcgcgc
cccttcgccgtcgcggcactggcccgcgacagcggccgcccggtcctggcggtgacggcc
acgggccgcgaggcggaggacctggcggccgccctgcgcacactgctgccgccggacggc
gtcgtggagtacccctcgtgggagacgctgccgcacgagcggctcagcccccgcagcgac
accgtgggcaggcgcctcgccgtcctgcgccgcctcgtccaccccagcgccgacgacccc
gagaccggccccgtctccgtcgtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aagggcctgggcgaactggaaccggtggccctgcgaagcggacagaccgccgacctgaac
cagatcgtggacgccctggcggccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggaatcctcgatgtgttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgttccctggaggtcgccgcgcacggcctgtgggcacccccgtgccgggagctgctg
ctcaccgacgacgtacggtcacgcgcgcgtgccctcgccgagcagcacccggagctcggc
gaactgctcggcaagatcgccgaaggcatcgccgtggagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggaactgctgctcgacgtcctgccgaagggcgccatggccgtc
gtctgcgacccggagcgggtccgcacgcgcgccgcggacctcgtggcgacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggc
gccgcctccctgtggtccatcgcggacgtccgcgaccgggcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaggaactcgacgcgagcaccctcaaactc
ggcatgcacgccccggagacctaccgcggcgacaccgccaaggccctcgccgacaccaag
ggctggctcgccgacggctggcgcaccgtctacgtcaccgaggcccacggccccgccgcc
cgcaccgtcgaggtgctcggcggcgagggcatcgcggcccgcctcgacaccgacctgggc
gagatctccccgtcggtggtgcacgtcgcgtgcgggtcgatcgacaacggcttcgtcgac
ccggcgctgcgcctggccgtgctcaccgagaccgacctgtcaggccagaaggcggccggc
cgcgacggcgcccgcatgcccgcccgccgccgcaagaccatcgacccgctcaccctggaa
ccgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacgcgcgagtacctcgtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccggctcggcggcgccgactggaccaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctgtacagcgcg
cgcatggcggcccccggccacaccttcgggcccgacacgccgtggcagcgcgagctggag
gacgccttcccctacgccgagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgcgccgccttcaaggccgtacaggacggcaagcaggtggcggtc
ctcgtcccgacgaccctgctggtgcagcagcacttcgggacgttcggcgaccggtacgcg
cagttcccggtgcgggtgaaggcgctgtcccggttccagacggacaccgaggcgaaggcg
gtactggaaggcctgcgggaaggctccgtggacgtcgtcatcggcacccaccggctgttc
tcctcggagacgaagttcaaggacctcggactggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtgctcaccatg
tcggccacccccatcccgcgaaccctcgaaatggccgtgaccggcatccgcgagatgtcc
accatcacgacccctccggaggagcggcacccggtgctcaccttcgtcgggccgtacgag
gagcggcagatcggcgcggccgtccggcgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgcggcggcccggctgcgggagatcatcccc
gaggcgcggatcgccaccgcgcacggacagatgtcggagtcggcactggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgcgaacaccctgatcgtcgagcgcggcgacaccttcggcctgtcg
cagctgcaccagctgcgcggccgcgtcggccgcggccgcgaacgcggctacgcctacttc
ctctacccgccggagaagcccctgaccgagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtgcgcatggtcggcgaggcggtcgccgactaccggcgccagttggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccc
cacgactacgcgcccggcgagcggctgcgcctccaggcgtaccgcgccatcgcctccgcc
aacacggaggaggacgtcaaggccgtacgcgaggaactcgtcgaccgctacggcaagttg
cccgagccggtggagaacctgctgctggtcgcgggcctgcgcatgctcgcccgcgcgtgc
gacgtcggtgagatcgtcctccagggcaacaacatccgcttcgcccccgtggacctgcgc
gaatcgcaggaactgcggctcaagcggctgtatccgggcacggtcgtcaagccggcggtc
caccaggtgctggtcccccgcccgaagaccgcgaaggtgggcggaaagccactggtcggg
cgcgaactgctcgggtgggtcggcgagttcctggcgtcggtgctgggttcgtag
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