Streptomyces caniscabiei: IHE65_26745
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Entry
IHE65_26745 CDS
T08931
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IHE65_26745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scae03400
]
IHE65_26745 (mfd)
Enzymes [BR:
scae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IHE65_26745 (mfd)
DNA repair and recombination proteins [BR:
scae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IHE65_26745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WEO26472
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All DBs
Position
6032242..6035775
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVQDAPLAEAIRAASDGHRTHIDLVGPPAARPFAVAALARDSGRPVLAVTA
TGREAEDLAAALRSLLPPDGVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLTHPRPDDP
ETGPVSVVVAPIRSVLQPQVKGLGDLEPVALRTGETADLNRTVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARDLAERHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLIDVLPKGAMAI
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWAIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVFVTEAHGPAA
RTVEVLGGEGIAARLEAELAEISPSVVHVACGSIDYGFIDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKA
TLEGLREGGVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAASRLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNTEADIASVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAA
HQVLVPRPKTAKVGGKPLLGRELLGWTGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccacggcctgctagacgccgtagtccaggacgcccccctcgcggaagcgatc
agggcggcgtccgacggccaccgcacccacatcgacctggtgggccccccggcggcccgc
cccttcgccgtggcggccctcgcccgcgactccggccgccccgtactcgccgtgacggcg
acgggccgcgaggccgaggacctggcggcggccctgcgctccctgctgcccccggacggc
gtcgcggagtacccggcctgggagaccctcccgcacgagcgcctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtgctgcgccggctgacgcacccccgtccggacgacccg
gagacgggcccggtgtcggtggtggtcgccccgatccgctcggtcctccagccgcaggtc
aagggcctcggcgacctggagccggtcgccctgcgcaccggcgagacggccgatctgaac
cgtacggtcgaggccctggcggcagccgcgtactcccgggtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagagatcgctggaagtggccgagcacggcctgtgggcgccaccctgccgtgagctcctc
ctcacggacgacgtgcgcgcccgcgcccgcgacctcgccgagcgccaccccgagctgggc
gaactgctgggcaagatcgccgagggcatcgccgtcgagggtatggagtccctcgccccg
gtcctcgtcgacgacatggagctgctgatcgacgtcctgccgaagggcgcgatggccatc
gtgtgcgacccggagcgggtgcgcacgcgcgcggcggacctggtggccacctcgcaggag
ttcctccaggcgtcctgggcggccacggccggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtgggccatcgcggacgtccgcgaccgggcccgtgagctggacatgatg
tggtggtcggtgtcgccgttcgcggccgacgaggagctggacgcggacacgctgaagctc
ggcatgcacgcccccgagacctatcgcggcgacaccgcgaaggcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgttcgtgaccgaggcgcacggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcatcgcggctcgtctggaggccgagctggcg
gagatctccccgtcggtcgtgcacgtggcgtgcgggtcgatcgactacggcttcatcgac
cccgccctgaagctcgcggtcctcaccgagaccgacctgtccgggcagaaggcggccggc
aaggacggcgcccggatgcccgcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgagcagcacggtgtcggccgctacatcgagatggtccag
cggaccgtgcagggcgcgacccgcgagtacctggtggtcgagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccacgctgcaccggctcggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtactcggcc
cggatggcggcgcccggtcacgcgttcggcgcggacacgccctggcagcgggagctggag
gacgccttcccgtacgccgagacgcccgaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgggccgccttcaaggccgtccaggacggcaagcaggtggcggtg
ctggtgccgacgaccctgctggtgcagcagcacttcggcacgttcagcgagcggtactcg
cagttcccggtgaacgtgcgggccctgtcccgcttccagacggacaccgaggccaaggcc
accctggagggtttgcgcgagggcggggtcgacatcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctgggtctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctgacgatg
tccgcgaccccgatcccgcgcacgctggagatggcggtcacgggcatccgcgagatgtcg
acgatcacgacgcctccggaggagcggcacccggtcctgaccttcgtcggcccgtacgag
gagaagcagatcggcgcggcgatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgcgcggcctcccggctgcgcgagatcgtgccc
gaggcgcggatcgcgacggcccacggccagatgtcggagcaggccctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctggtctccaccacgatcgtggagtcgggc
atcgacatctccaacgcgaacacgctgatcgtggagcgcggcgacaccttcggtctgtcg
cagctgcaccagctcaggggccgggtcggccgaggccgggagcggggttacgcctacttc
ctgtacccgccggagaagccgctgacggagacggcccacgagcgtctggcgaccatcgcc
cagcacacggagatgggtgcgggcatgtacgtggcgatgaaggacctggagatccggggc
gcgggcaacctcctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgcggactaccggcgccagctggagaccgggggg
atcgaggaggagccgccgctcgaggtgaagatcgagctgccggtcgacgcgcatgtcccg
cacgactacgcgccgggcgagcggctgcggctccaggcctaccgggccatcgcctccgtg
aacaccgaggccgacatcgcctcggtgcgcgaggaactcgtcgaccgctacggcaagttg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctggcgcgcgcctgc
ggcgtcggcgagatcgtcctccagggcaccaacatccgcttcgcgccggtggagttgcgg
gagtcgcaggagctgcgtctgaagcggctctacccgggcacggtcatcaagccggccgcg
caccaggtgctggtgccgcgtccgaagacggcgaaggtgggcggcaagccgctgctcgga
cgggaactgctgggctggaccggggagttcctggcgtcgatcctggggtcgtga
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