Streptococcus canis: NCTC12191_00039
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Entry
NCTC12191_00039 CDS
T07143
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scai
Streptococcus canis
Pathway
scai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12191_00039 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scai03019
]
NCTC12191_00039 (rnr)
03016 Transfer RNA biogenesis [BR:
scai03016
]
NCTC12191_00039 (rnr)
Enzymes [BR:
scai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12191_00039 (rnr)
Messenger RNA biogenesis [BR:
scai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12191_00039 (rnr)
Transfer RNA biogenesis [BR:
scai03016
]
Prokaryotic type
tRNA degradation factors
NCTC12191_00039 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
VEE23933
LinkDB
All DBs
Position
1:complement(50403..52733)
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AA seq
776 aa
AA seq
DB search
MKERIMTYLKEYGKSNVNDLAAALEMAGAKHFPSLIKTISKMESQGLLRFSNDGSLALRK
EREKKKEPTIQGVFRANKAGFGFLFVDESEDDMFIGRNDVGYAIDGDTVEVVIKKPADRL
KGTAAEAKVVAIVDRSLKTAVGTFILDDEKPKYAGYIKSKNQKIQQKIYIKKEPVVLKGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEEVLAEAGAI
PETPSDKDLVGRVDLRQERTITIDGADAKDLDDAIHIKLLDNGNYELGVHIADVSYYVTE
GSALDKEAVRRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSALMEINAQGHVVNY
QICQSVIKTTYRMTYSAVNDMIAGDEEALQEFASIADDVTLMVALHRMLEAMRSKRGALN
FDTQEAKIIVNDKGMPVDVVLRQRGIAERMIESFMLAANECVAEHFAKAKLPFIYRIHEE
PKAEKLQKFIDYAGIFGIQIQGTANKISQEALQAFMAKVQGQPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYNQPSQEKRDHFAQVIPELATSS
SQLERRAIDAERVVEAMKKAEYMAEYVGEEFDGLVASVVKFGLFVELPNTIEGLIHITNL
PEYYHFNERTLSLQGEKSGKVFTVGQAIRVKLVKADKETGDIDFEYLPSDYDVVEKITTS
NKTGRRDRRQKGTLDKGSKKKDPKEIARAKAKGKSKKGSKKPFYKEQIKKKSRKRS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagaattatgacttacctcaaggagtatggcaagtcaaatgtgaatgacttg
gctgcggccttggagatggctggcgctaagcattttcccagccttattaaaaccatttcc
aaaatggaaagtcaggggcttttacgattttcaaatgacggtagtctggctcttagaaaa
gagcgtgaaaagaaaaaagaacctactattcagggtgtttttcgtgccaataaagcaggc
tttggtttcttgtttgttgatgagagtgaagacgatatgtttattggccgcaatgatgtt
ggctatgccattgatggtgatactgtcgaagtagtgattaaaaagccggctgaccgtctt
aaaggcacagcagctgaagctaaggtcgttgctattgttgaccgttctttaaaaacagct
gttggaacctttattttagatgatgaaaaaccgaaatatgctggttatatcaagtctaaa
aatcaaaagattcaacaaaaaatctacatcaaaaaagagcctgttgtgctgaaaggcact
gaaattatcaaggttgacattgataaatacccgacacgtggtcatgactattttgtggcc
agtgtgcgtgatattgtgggtcatcaaggagacgttggaattgatgtcttagaagttctc
gaatcaatggatattgtatcagaatttccagaagaggttttggcagaggctggtgctatt
ccagagacgcctagcgataaagacttagtaggccgtgtggatttgcgtcaagaaaggaca
attaccattgatggtgctgatgcaaaagatttagacgatgccattcatatcaagttactg
gataacgggaattatgaacttggagtgcatattgcagatgtctcttattatgtgacagaa
gggtctgcccttgataaggaagctgttaggcgtggtacttctgtctatgtcaccgatcgt
gtggtgccaatgttgccagaacggttatcaaatggtatttgctcccttaaccctaacgta
gaccgcctgacccaatcagccttgatggaaattaatgctcaagggcatgtggtcaattat
caaatctgtcaatcagtgattaagacaacctaccgaatgacttatagtgcggtcaatgac
atgattgcaggagatgaagaggcacttcaggaattcgccagcattgctgatgatgtgacc
cttatggtggccttgcatcggatgttggaagccatgcgttcaaaacgaggcgccctaaat
tttgacacgcaagaagctaaaattattgtaaatgacaaaggaatgccggtcgatgtggtg
cttcgtcaaaggggaattgccgagcggatgattgagtcctttatgttggcagctaatgag
tgcgttgcggaacattttgcaaaggctaagttgccttttatctatcgtattcacgaagaa
ccaaaggctgaaaagcttcaaaaattcattgattatgctggcatctttggtattcaaatt
caaggaacagccaacaagatttctcaggaagccttgcaagcctttatggcaaaagtgcaa
ggtcagccgggagccgaagtgcttaacatgatgctcttgcgttctatgcaacaggcgagg
tattctgaacataatcacggccattacggtttggctgcagaatactacacccactttacc
agtccgattcgtcgctaccctgacttgttggttcaccgcatgattcgtgagtacaatcaa
cctagtcaagaaaagcgtgaccattttgcccaagtcattccagaattggcaacatcttct
tcacagttagagcgtcgtgccattgatgcggagcgcgtggtggaagccatgaagaaagca
gaatatatggctgagtatgtcggtgaggaatttgatggtctcgtggccagtgtggttaag
tttggtctctttgtggagctgccaaacactattgaaggtttgattcatattactaatctt
cctgaatattatcactttaatgaacgaaccttgagccttcaaggtgaaaaatcaggtaag
gtctttacagttgggcaagccattcgggtgaagctggttaaggctgacaaggaaactggt
gacattgactttgagtatttgccaagtgattatgatgtggttgaaaagatcacgacatcg
aataaaacaggccgaagagatcgtcgtcaaaaagggacattggataaagggtcaaagaaa
aaagatcctaaggaaatagctagggcaaaagctaaaggcaaatccaaaaaaggttctaaa
aagccattttacaaagaacaaataaaaaagaagagtcgtaaaaggagttaa
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