Streptomyces californicus: I6J39_24765
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Entry
I6J39_24765 CDS
T07611
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scal
Streptomyces californicus
Pathway
scal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6J39_24765 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scal03400
]
I6J39_24765 (ligD)
Enzymes [BR:
scal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6J39_24765 (ligD)
DNA repair and recombination proteins [BR:
scal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6J39_24765 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QRV30144
LinkDB
All DBs
Position
complement(5653398..5654288)
Genome browser
AA seq
296 aa
AA seq
DB search
MTPMTEVEGRRIPLSNLDKVLYPATGTTKGEVLHYYAATAGDVILPHLRDRPVSFLRYPD
GPGGQLFFTKNPPPGTPAWVATAPVPHSEDRSARQPVVGDLASLMWAANLVVEFHTPQWR
TGAPGLADRLVLDLDPGAPATVVECCAVALWLRERLAADGLTAYGKTSGSKGLHLLVPLE
PTPSEAASAYAKRLAQEAEAALPELALHRMKRALRPGKVFVDFSQNAASKTTAAPYTLRA
RPEPTVSAPVTWDEIAGCREPGALVFRAGDMAGRLERYGDPLAPLNDPEQTRPLPG
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatgaccgaggtggaggggcgacggatcccgctcagcaatctcgacaaggtt
ctgtatccggccaccgggacgaccaagggcgaggtgctgcactattacgcggccacggcg
ggcgacgtgatcctgccccacctgcgcgaccgcccggtctccttcctgcggtacccggac
gggcccggcggccagctcttcttcaccaagaatccgccgcccggtacgcccgcctgggtg
gccacggcccccgtcccccacagcgaggaccggtccgcccggcagccggtcgtgggcgat
ctggcctcgctgatgtgggcggccaacctggtggtggagttccacaccccgcagtggcgc
accggcgcaccggggctcgccgaccggctggtcctcgacctggaccccggcgcgcccgcg
accgtcgtggagtgctgcgcggtggcgctctggctgcgggaacgcctcgcggccgacggg
ctgacggcgtacgggaagacgtccgggtccaaggggctgcacctgctcgtcccgctggag
cccaccccgagcgaggcggcgtccgcgtacgcgaaacggctcgcccaggaggcggaggcc
gcccttccggagctggccctgcaccggatgaagcgcgccctgcggcccggcaaggtcttc
gtggacttcagccagaacgccgcgtcgaagacgaccgccgcgccgtacacgctgcgcgcc
cgccccgagccgaccgtctccgccccggtcacctgggacgagatcgccgggtgccgggag
cccggggcgctggtgttccgggccggggacatggccggccggctggagcggtacggcgat
ccgctcgccccgctgaacgacccggagcagacgcgtccgctgccgggatga
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