Struthio camelus australis (South African ostrich): 104145345
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Entry
104145345 CDS
T08512
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03030
DNA replication
scam03410
Base excision repair
scam03420
Nucleotide excision repair
scam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104145345 (LIG1)
03410 Base excision repair
104145345 (LIG1)
03420 Nucleotide excision repair
104145345 (LIG1)
03430 Mismatch repair
104145345 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scam03032
]
104145345 (LIG1)
03400 DNA repair and recombination proteins [BR:
scam03400
]
104145345 (LIG1)
Enzymes [BR:
scam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104145345 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
104145345 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
104145345 (LIG1)
DNA replication proteins [BR:
scam03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
104145345 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
104145345 (LIG1)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
104145345 (LIG1)
NER (nucleotide excision repair)
Other NER factors
104145345 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
104145345 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PGM1_C
Plasmodium_Vir
Motif
Other DBs
NCBI-GeneID:
104145345
NCBI-ProteinID:
XP_009675115
LinkDB
All DBs
Position
Unknown
AA seq
932 aa
AA seq
DB search
MSPRVHGAGAYNRVPDCLSWYRYWVAQWCPGAAIAQPSAVLVLVLLVLVLAGLAVCQYRS
FFVPARSPDPCATPVPALDQGEDPVQDAAQESPCLGHEDCVGQDPGSPSSCLLAAASPDV
SSPGSASSGEDSPSAPDSSSTSLPGIPRRRTARKQVPKRKMELASCAENGHDVEPDPKRQ
REEPGDGCKLDSTEMQEVRDQSSEEAKEAEDGNRDGETQASELPKSSKAIADIFAPRKGS
RTKAEERAASKMPTLKSSAPTSIESTNGTASSPSQVAEPLDPAQYNPSKSSYHPIHDACW
APRQRVPYLAVARTFERIEEVSARLKNIETLSNFLRSVIALSPSDLLACVYLCLNRLGPA
YEGLELGIGESILMKAVAQATGRQLEKIKSEAQEKGDLGLVAESSRSNQRTMFAPPKLSA
AGVLSKLQEMARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLSGKLRIGLAEQSVLV
ALAHAVSLTPPAQGWPPAVVDASQGKNHPVLNRARPGLFFSSELPNYAAIIPVLLEHGLE
SLPLHCKITPGIPLKPMLAQPTKGIGELLKRFEEVAFTCEYKYDGERAQIHILENGAVYV
YSRNQENNTSKYPDIITRIPKVKKASVQSCILDAEAVAWDPEKKQIQPFQVLMTRKRKDV
EAAEIKVQVCLYAFDMLYLNGESLVKEPFSKRRRLLRESFVETEGEFLFATSMDACSTEE
ISEFLDQSIKDSCEGLMVKTLDVDATYEIAKRSHKWLKLKKDYLEGVGDTLDLVVIGAYL
GKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHYGFLKDHVLDQPRPYYRW
DSGAAPDHWLAAVQVWEVKCGDLSISPVYKAAVGLVDEEKGISLRFPRFLRVREDKKPEE
ATSSSQVAELYKKQQQIQNQQLAEKGEDEDFY
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccccgggtgcacggagcgggtgcttataaccgggtgcctgactgcctgtcctgg
taccggtactgggtcgcccagtggtgtcccggtgctgctattgcccaacctagcgctgtc
ctggtgctggtactgctggtactggtactggccggcctggcagtgtgtcagtaccggtcg
ttcttcgtgcctgcccgctcaccagatccctgcgccacgccggtgcctgcgctggatcaa
ggcgaagaccccgtgcaggacgctgcgcaggaatccccatgcttgggacatgaggactgt
gttgggcaggatcccggctccccatcctcctgcctgctggctgctgcgtccccagatgtc
tcttctcccggcagcgcctcctcgggtgaagatagcccctctgcccctgacagctcctcc
acttcccttcctggtatcccccggcgcaggacggctcgtaagcaggtccccaagcgcaaa
atggagctggcgagctgtgcggagaacgggcacgacgtggagcctgatcccaagcggcag
agggaagagccgggagatggatgcaaattggacagcacagagatgcaggaggtgagggat
cagagctcagaggaggctaaggaggcagaagatggcaacagggatggtgaaacccaggca
tcagagcttccaaagtccagcaaagccattgctgacatctttgcccccaggaaggggtcg
aggacaaaggcagaggaaagggcagcctcgaagatgccaaccctgaagagttcagccccc
accagcattgaaagcacgaatgggactgcaagcagtccctcccaggttgctgagcctctg
gatccagcccagtacaacccctccaagagcagctatcaccccattcatgatgcctgctgg
gcccccaggcagagggtcccctacctggctgtggctcgtacctttgagcgcattgaggaa
gtctctgcccgcctgaagaacattgagaccctaagcaacttcctccgctcagtcattgcc
ctgtcaccatctgacctcctggcctgcgtctacctctgtctgaaccgcctaggccctgcc
tatgaggggctggagctgggcattggggagagcatcctcatgaaggctgttgcacaggcc
acgggccgccagctagagaaaatcaagagcgaggcccaggagaagggagatctggggctg
gtggccgagagcagccgcagcaaccagcggaccatgttcgcgccacccaagctgagcgcc
gccggggtcctcagcaagctgcaggagatggccaggatgacaggcaatgcctcaatgaac
aagaaaatcgatatcatcaaggggctgtttgtggcctgccgccactccgaggctcgctac
attgcccggtcactgagcgggaagctgcgcatcgggctggcagagcagtcagtgctggtg
gctttggcccacgccgtctcactgactcccccagcacaagggtggcccccagctgtggtg
gatgccagccagggcaagaatcacccagtgttgaacagagctcgaccaggcttatttttt
tccagtgagctgccgaactatgctgccatcattcctgtgctgctggagcacgggctcgag
agcctgcccctgcactgcaagatcaccccagggattcccctgaagcccatgctggcccag
cccaccaaaggcatcggggagctcctgaaacgctttgaggaggtggccttcacctgcgag
tacaagtacgatggcgagcgagcccagatccacatcctggagaatggggccgtgtatgtc
tacagccgcaaccaggagaacaacacctccaagtaccctgacatcatcacccgcatcccc
aaggtgaagaaggccagtgtgcagtcgtgcatcctggatgcagaagctgtcgcgtgggac
ccagagaagaagcaaattcagccgttccaggtgctgatgacacggaagaggaaggacgtg
gaggctgctgagatcaaagtgcaagtgtgcctgtatgcctttgacatgctgtacctcaat
ggggagtcgctggtgaaggagcctttctccaagcgccgacggttgctgcgcgaatccttc
gtggagacagagggtgaattcctctttgccacctccatggatgcctgcagcacagaggaa
atctctgaattcttggaccagtccatcaaggactcctgcgagggcctcatggtgaagact
ctggatgtggatgccacctatgaaattgcaaagcgatcccacaagtggctgaagctgaag
aaggattacctggaaggagtcggggacacgctggacttggtggtcatcggtgcctacctg
gggaagggcaagcgcgtaggcatgtatgggggcttcctgctggcctgctacgatgaggag
agtgaagagtaccagagcatctgcaagattgggacgggcttcacggaggagagcttagaa
aagcactacggcttcctcaaggaccatgtcctggaccagccacggccctactaccgctgg
gacagcggggcagcacctgaccactggctggcagctgtgcaggtttgggaggtgaagtgt
ggtgacctctccatctcccctgtctacaaagcagctgtgggcctggtcgatgaggagaaa
ggcatctcactgcgcttcccccggttcctgcgtgtgcgggaggacaagaagccagaagag
gctaccagcagctcccaggtggctgagctatacaagaagcagcagcagatccagaaccag
cagcttgcagagaaaggggaggatgaggacttttactaa
DBGET
integrated database retrieval system
