Struthio camelus australis (South African ostrich): 104146491
Help
Entry
104146491 CDS
T08512
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03013
Nucleocytoplasmic transport
scam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104146491 (UPF1)
03015 mRNA surveillance pathway
104146491 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scam03019
]
104146491 (UPF1)
Enzymes [BR:
scam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104146491 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104146491 (UPF1)
Messenger RNA biogenesis [BR:
scam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104146491 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104146491 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104146491
NCBI-ProteinID:
XP_009676829
Ensembl:
ENSSCUG00000010194
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MPKCLAYTLGVAAMVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
GKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP
LNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQT
HDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQK
NRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatgcttagcgtacaccctgggtgtagctgctatggttaacggacctgatggc
attctgcagaacggagctgtggacgataatgtggctaaaaccagccagcttctggcagag
ctgaattttgaagaagatgaggaagatacctattacacaaaggacctccctgtgcatgcc
tgcagctactgtggtatccatgacccagcttgtgtggtttactgcaacaccagcaaaaaa
tggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtgaga
gcgaagtgcaaagaggtgacgctccacaaagatgggcctctaggagagactgtcttggaa
tgttataactgtggatgtcgtaatgtgtttctcctgggctttattccagcgaaggcagac
tctgtggttgttttgctgtgcaggcaaccatgtgccagtcagagcagtttaaaggatatt
aactgggacagttcacagtggcagcctcttatccaagaccgctgtttcctttcatggctg
ggaaagattccatctgaacaggaacagctgagagcacgtcagattacagctcaacagatt
aacaaactggaagaactttggaaggaaaatccatctgcaactcttgaggatttagaaaag
cctggtgttgatgaagagccacagcatgtcctacttagatatgaagatgcttatcaatac
caaaatatatttggtcctctagtgaagcttgaggcagactatgacaagaaactcaaggag
tctcagacccaagataacatcacagtcagatgggacttgggcttgaacaagaaaagaatt
gcttatttcactttgccgaagaccgattcagatatgcgtcttatgcaaggagacgagatc
tgcttgaggtataaaggagacctggcccctttatggaagggaattggtcatgttatcaaa
gttcctgataattatggtgacgagatagccattgagctaagaagcagcgttggagcgcct
gtggaagttactcataacttccaagtggattttgtatggaagtctacttcatttgacaga
atgcagagtgctttaaaaacatttgctgtggatgagacttcagtgtctgggtacatctat
cacaagctgttaggccacgaggtagaagatgtaattattaaatgccagttgccaaagcgc
tttacagcacaaggacttcctgatctcaaccattctcaggtttatgctgtgaagactgtc
ttgcagcgtcccttgagtcttattcagggtccccctggtacaggaaaaacagtgacatca
gccacaattgtctatcatctggctagacagggcaatgggcctgtattagtctgtgctcca
agtaacatagctgtagatcagttgactgagaagattcatcaaactggactgaaagtggtt
cgcctgtgtgctaaaagtcgtgaggcaattgattctcctgtatccttcttggcattgcat
aaccagatcagaaacatggatagcatgccagagcttcagaaactgcagcagcttaaagat
gaaactggagaactgtcatccgctgatgagaaacgttaccgtgcactgaaacgaacagca
gagcgtgaattgcttatgaatgcagatgtgatttgttgcacatgtgtgggagctggtgat
ccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagcacgcaggctact
gagccagagtgtatggtgccagttgtcctgggagcaaaacagctaattcttgtaggtgac
cactgtcagcttggtcctgttgtgatgtgtaaaaaagctgcaaaggctggcctatctcag
tctctctttgagaggcttgtggtgctggggatccgtccgattcgccttcaagtgcagtat
cgcatgcatcctgcacttagtgcttttccatccaatatcttctatgagggttcactccag
aatggtgttactgcagcggaccgtgtgaaaaaaggatttgatttccagtggccacagcca
gataagccaatgtttttctatgttacacaaggacaggaagaaattgccagttcaggcacc
tcttacttaaacagaacggaagcagccaatgtggagaagattactacaaagttattgaaa
gctggtgccaaaccagatcagattggcattattactccttatgagggtcagcgatcctat
ctggtgcagtacatgcaattcagtggttccttgcacacgaaactttaccaggaagtggaa
attgcgagtgtggatgccttccagggacgggagaaggactttattatcctttcttgtgtc
agggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgtcttaatgtggct
cttacaagagcaaggtatggcgtaattattgttgggaacccaaaagcactgtctaaacaa
ccactttggaatcacctgctgaattattacaaggagcagaaggttctggtggagggacca
ctgaataacctccgggaaagccttatgcaattcagcaagccccggaaacttgtcaatacc
atcaatccaggtgcccgttttatgactactgccatgtatgatgcacgtgaggctattatt
ccaggatctgtctatgaccggagcagtcaagggcgcccgtccaacatgtacttccaaact
catgaccagattgggatgattagtgctggccccagccacgtcactgctatgaacattcct
atccctttcaaccttgtgatgccaccgatgccaccaccgggatactttggccaggctaat
ggaccagctgcaggacgaggggcaccaaaaggaaagactggtcgtggtgggcgtcagaaa
aatcgttttgggattcctggaactagtcagtcaaaccttccaaatagtcaagcaagccaa
gatgtggtgtcccagcctttctcccagggtccactgactcaagggtatatctccatgagt
cagccatcgcagatgagtcagcctgggctctcccaaccagaattatcacaggacagttac
cttggtgatgagtttaaatctcagatcgatgtggcgctgtcacaggactctacttaccag
ggtgaacgcgcatatcaacatggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
